FFCP PHASE1:Hg19::chr13:98503553..98503558,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr13:98503553..98503558,- | |||
|coexpression_cluster_id=C145 | |||
|description=CAGE_peak_at_chr13:98503553..98503558,- | |||
|id=chr13:98503553..98503558,- | |||
|ontology_enrichment_celltype=CL:0000319!3.02e-07!1;CL:0000569!6.22e-07!4;CL:0000011!6.22e-07!4;CL:0002127!6.57e-07!1;CL:0000914!6.57e-07!1;CL:0000911!6.57e-07!1;CL:0000814!6.57e-07!1;CL:0002042!6.57e-07!1;CL:0002039!6.57e-07!1;CL:0002040!6.57e-07!1;CL:0002041!6.57e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0002253;7.05e-34;2!CL:0002563;1.03e-17;4!CL:0000333;1.40e-14;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,7.05e-34,2;CL:0002563,1.03e-17,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!3.32e-10!10;DOID:2355!2.84e-07!1;DOID:3030!3.02e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:171;2.08e-27;10!DOID:3095;3.77e-13;22!DOID:2994;3.77e-13;22!DOID:169;2.19e-12;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,2.08e-27,10;DOID:3095,3.77e-13,22;DOID:2994,3.77e-13,22;DOID:169,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0002146!3.41e-07!1;UBERON:0005623!3.41e-07!1;UBERON:0001282!6.20e-07!1;UBERON:0009842!6.20e-07!1;UBERON:0003704!6.20e-07!1;UBERON:0001171!6.20e-07!1;UBERON:0001172!6.20e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;8.69e-18;4!UBERON:0000923;8.69e-18;4!UBERON:0010316;8.69e-18;4!UBERON:0005291;8.69e-18;4!UBERON:0001052;1.03e-17;4!UBERON:0001242;1.03e-17;4!UBERON:0001262;1.03e-17;4!UBERON:0004786;1.03e-17;4!UBERON:0004808;1.03e-17;4!UBERON:0001277;1.03e-17;4!UBERON:0000013;1.40e-14;5!UBERON:0002410;1.40e-14;5!UBERON:0002050;1.60e-14;5!UBERON:0005423;1.60e-14;5!UBERON:0004907;1.83e-14;5!UBERON:0000485;9.89e-11;7!UBERON:0003929;9.89e-11;7!UBERON:0003350;1.47e-09;8!UBERON:0000010;1.04e-08;8!UBERON:0001155;1.21e-08;9!UBERON:0000059;2.63e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,1.03e-17,4;UBERON:0001242,1.03e-17,4;UBERON:0001262,1.03e-17,4;UBERON:0004786,1.03e-17,4;UBERON:0004808,1.03e-17,4;UBERON:0001277,1.03e-17,4;UBERON:0000013,1.40e-14,5;UBERON:0002410,1.40e-14,5;UBERON:0004907,1.83e-14,5;UBERON:0003350,1.47e-09,8;UBERON:0000010,1.04e-08,8;UBERON:0001155,1.21e-08,9;UBERON:0000485,1.21e-08,9;UBERON:0000059,2.63e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,2.81305231664718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285465333544967,0,0,0,0,0.233713309847224,0,0,0,0,0.915360273587694,0.151230923763239,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.383683113910955,0,15.5693282437337,0,4.24331324885063,0,0.619678821295011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672791175483681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:98503553..98503558,- | |||
}} |
Latest revision as of 17:36, 24 July 2015
Short description: | p@chr13:98503553..98503558, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:98503553..98503558, - |
Coexpression cluster: | C145_neuroblastoma_peripheral_neuroectodermal_neuroepithelioma_carcinoid_adult_extraskeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 7.05e-34 | 2 |
intestinal epithelial cell | 1.03e-17 | 4 |
Ontology term | p-value | n |
---|---|---|
rectum | 1.03e-17 | 4 |
intestinal mucosa | 1.03e-17 | 4 |
wall of intestine | 1.03e-17 | 4 |
gastrointestinal system mucosa | 1.03e-17 | 4 |
gastrointestinal system epithelium | 1.03e-17 | 4 |
intestinal epithelium | 1.03e-17 | 4 |
sympathetic nervous system | 1.40e-14 | 5 |
autonomic nervous system | 1.40e-14 | 5 |
lower digestive tract | 1.83e-14 | 5 |
epithelium of mucosa | 1.47e-09 | 8 |
peripheral nervous system | 1.04e-08 | 8 |
colon | 1.21e-08 | 9 |
simple columnar epithelium | 1.21e-08 | 9 |
large intestine | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 2.08e-27 | 10 |
germ cell and embryonal cancer | 3.77e-13 | 22 |
germ cell cancer | 3.77e-13 | 22 |
neuroendocrine tumor | 2.19e-12 | 6 |