FFCP PHASE1:Hg19::chr13:99628257..99628268,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:99628257..99628268,- | |||
|coexpression_cluster_id=C84 | |||
|description=CAGE_peak_at_chr13:99628257..99628268,- | |description=CAGE_peak_at_chr13:99628257..99628268,- | ||
|id=chr13:99628257..99628268,- | |id=chr13:99628257..99628268,- | ||
|ontology_enrichment_celltype=CL:0002139!3.47e-20!24;CL:0002618!1.13e-19!3;CL:0000071!1.23e-16!18;CL:0002546!1.23e-16!18;CL:0000115!2.22e-13!35;CL:0002544!2.39e-10!6;CL:0002078!2.42e-10!44;CL:0002543!4.20e-10!6;CL:0000039!5.56e-09!7;CL:0000586!5.56e-09!7;CL:0000213!1.19e-07!57;CL:0000215!1.19e-07!57;CL:1000413!4.84e-07!9 | |ontology_enrichment_celltype=CL:0002139!3.47e-20!24;CL:0002618!1.13e-19!3;CL:0000071!1.23e-16!18;CL:0002546!1.23e-16!18;CL:0000115!2.22e-13!35;CL:0002544!2.39e-10!6;CL:0002078!2.42e-10!44;CL:0002543!4.20e-10!6;CL:0000039!5.56e-09!7;CL:0000586!5.56e-09!7;CL:0000213!1.19e-07!57;CL:0000215!1.19e-07!57;CL:1000413!4.84e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.64e-38;7!CL:0000586;1.64e-38;7!CL:0002253;5.96e-34;2!CL:0002563;9.45e-18;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,1.80e-38,7;CL:0000586,1.80e-38,7;CL:0002253,5.04e-34,2;CL:0002563,8.69e-18,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1799!9.44e-08!1;DOID:10165!9.44e-08!1;DOID:1798!9.44e-08!1;DOID:4960!1.48e-07!1;DOID:0070004!1.48e-07!1 | |ontology_enrichment_disease=DOID:1799!9.44e-08!1;DOID:10165!9.44e-08!1;DOID:1798!9.44e-08!1;DOID:4960!1.48e-07!1;DOID:0070004!1.48e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3095;3.89e-13;22!DOID:2994;3.89e-13;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.01e-13,22;DOID:2994,4.01e-13,22 | |||
|ontology_enrichment_uberon=UBERON:0001986!1.23e-16!18;UBERON:0004638!1.23e-16!18;UBERON:0004852!1.23e-16!18;UBERON:0000487!1.87e-13!22;UBERON:0002066!5.03e-12!5;UBERON:0006914!9.78e-12!25;UBERON:0002022!3.17e-07!1;UBERON:0002370!3.28e-07!4;UBERON:0005058!3.28e-07!4;UBERON:0009113!3.28e-07!4;UBERON:0003295!3.28e-07!4;UBERON:0005562!3.28e-07!4;UBERON:0003915!4.84e-07!9;UBERON:0004700!4.84e-07!9;UBERON:0001917!4.84e-07!9;UBERON:0001638!6.99e-07!9;UBERON:0003920!6.99e-07!9;UBERON:0004582!6.99e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0001052;9.45e-18;4!UBERON:0001242;9.45e-18;4!UBERON:0001262;9.45e-18;4!UBERON:0004786;9.45e-18;4!UBERON:0004808;9.45e-18;4!UBERON:0001277;9.45e-18;4!UBERON:0004907;1.71e-14;5!UBERON:0000485;9.43e-11;7!UBERON:0003929;9.43e-11;7!UBERON:0003350;1.41e-09;8!UBERON:0001155;1.16e-08;9!UBERON:0000059;2.55e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001052,8.69e-18,4;UBERON:0001242,8.69e-18,4;UBERON:0001262,8.69e-18,4;UBERON:0004786,8.69e-18,4;UBERON:0004808,8.69e-18,4;UBERON:0001277,8.69e-18,4;UBERON:0004907,1.60e-14,5;UBERON:0003350,1.35e-09,8;UBERON:0001155,1.12e-08,9;UBERON:0000485,1.12e-08,9;UBERON:0000059,2.47e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0,0,0,0,0,0.71153252537342,0,0,0,0.24406205754817,0,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07507513949254,0.179515288819544,4.0199527611143,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0.0645889098360061,0.806971285846153,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0,0,0,0,0,0.71153252537342,0,0,0,0.24406205754817,0,0,0.357198913136319,0.44905874525234,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142283686696828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07507513949254,0.179515288819544,4.0199527611143,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26164914294305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0.471612915298998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0.0645889098360061,0.806971285846153,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr13:99628257..99628268,- | |short_description=p@chr13:99628257..99628268,- | ||
}} | }} |
Latest revision as of 17:41, 24 July 2015
Short description: | p@chr13:99628257..99628268, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:99628257..99628268, - |
Coexpression cluster: | C84_choriocarcinoma_pancreatic_Wilms_Mallassezderived_thymus_salivary_colon |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 1.80e-38 | 7 |
germ cell | 1.80e-38 | 7 |
epithelial cell of large intestine | 5.04e-34 | 2 |
intestinal epithelial cell | 8.69e-18 | 4 |
Ontology term | p-value | n |
---|---|---|
rectum | 8.69e-18 | 4 |
intestinal mucosa | 8.69e-18 | 4 |
wall of intestine | 8.69e-18 | 4 |
gastrointestinal system mucosa | 8.69e-18 | 4 |
gastrointestinal system epithelium | 8.69e-18 | 4 |
intestinal epithelium | 8.69e-18 | 4 |
lower digestive tract | 1.60e-14 | 5 |
epithelium of mucosa | 1.35e-09 | 8 |
colon | 1.12e-08 | 9 |
simple columnar epithelium | 1.12e-08 | 9 |
large intestine | 2.47e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.01e-13 | 22 |
germ cell cancer | 4.01e-13 | 22 |