FFCP PHASE1:Hg19::chr17:50906109..50906121,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:50906109..50906121,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_at_chr17:50906109..50906121,- | |description=CAGE_peak_at_chr17:50906109..50906121,- | ||
|id=chr17:50906109..50906121,- | |id=chr17:50906109..50906121,- | ||
|ontology_enrichment_celltype=CL:0002178!3.97e-07!3 | |ontology_enrichment_celltype=CL:0002178!3.97e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002178;9.94e-13;3!CL:0000039;5.02e-12;7!CL:0000586;5.02e-12;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,8.34e-13,3;CL:0000039,5.02e-12,7;CL:0000586,5.02e-12,7 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.72e-08;10!UBERON:0005564;1.72e-08;10!UBERON:0007123;8.04e-08;5 | |||
|ontology_enrichment_disease=DOID:162!1.77e-22!235;DOID:14566!7.83e-22!239;DOID:0050687!2.01e-20!143;DOID:305!8.61e-18!106;DOID:4468!5.93e-10!2;DOID:0050686!5.31e-09!137;DOID:299!5.77e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:3112;4.24e-10;1!DOID:3095;7.50e-10;22!DOID:2994;7.50e-10;22!DOID:3905;2.95e-09;9!DOID:299;9.25e-09;25!DOID:3908;5.79e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.94e-15,143;DOID:162,5.01e-13,235;DOID:14566,1.10e-12,239;DOID:3112,4.06e-10,1;DOID:305,6.76e-10,106;DOID:3095,7.94e-10,22;DOID:2994,7.94e-10,22;DOID:3905,3.71e-09,9;DOID:299,8.73e-09,25;DOID:3908,6.77e-08,5;DOID:0050686,4.23e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000473!2.95e-09!8;UBERON:0003135!9.85e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.73e-10;8!UBERON:0000945;5.49e-08;5!UBERON:0010039;5.49e-08;5!UBERON:0002046;8.04e-08;5!UBERON:0003135;9.24e-08;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.62e-10,8;UBERON:0000945,1.84e-10,8;UBERON:0010039,1.84e-10,8;UBERON:0002046,7.25e-08,5;UBERON:0004117,7.25e-08,5;UBERON:0007689,7.25e-08,5;UBERON:0007123,7.25e-08,5;UBERON:0003091,7.25e-08,5;UBERON:0003135,8.83e-08,11 | |||
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| ||
|short_description=p@chr17:50906109..50906121,- | |short_description=p@chr17:50906109..50906121,- | ||
}} | }} |
Latest revision as of 18:57, 25 July 2015
Short description: | p@chr17:50906109..50906121, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:50906109..50906121, - |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 8.34e-13 | 3 |
germ line cell | 5.02e-12 | 7 |
germ cell | 5.02e-12 | 7 |
Ontology term | p-value | n |
---|---|---|
testis | 1.62e-10 | 8 |
stomach | 1.84e-10 | 8 |
food storage organ | 1.84e-10 | 8 |
thyroid gland | 7.25e-08 | 5 |
pharyngeal pouch | 7.25e-08 | 5 |
thyroid diverticulum | 7.25e-08 | 5 |
pharyngeal pouch 2 | 7.25e-08 | 5 |
thyroid primordium | 7.25e-08 | 5 |
male reproductive organ | 8.83e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.94e-15 | 143 |
cancer | 5.01e-13 | 235 |
disease of cellular proliferation | 1.10e-12 | 239 |
papillary adenocarcinoma | 4.06e-10 | 1 |
carcinoma | 6.76e-10 | 106 |
germ cell and embryonal cancer | 7.94e-10 | 22 |
germ cell cancer | 7.94e-10 | 22 |
lung carcinoma | 3.71e-09 | 9 |
adenocarcinoma | 8.73e-09 | 25 |
non-small cell lung carcinoma | 6.77e-08 | 5 |
organ system cancer | 4.23e-07 | 137 |