FFCP PHASE1:Hg19::chr1:114523110..114523125,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:114523110..114523125,+ | |||
|description=CAGE_peak_at_chr1:114523110..114523125,+ | |description=CAGE_peak_at_chr1:114523110..114523125,+ | ||
|id=chr1:114523110..114523125,+ | |id=chr1:114523110..114523125,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.66e-24!180;CL:0000057!2.04e-16!75;CL:0000680!8.67e-09!57;CL:0000056!8.67e-09!57;CL:0000355!8.67e-09!57;CL:0000034!2.64e-08!444;CL:0000183!5.49e-08!59;CL:0000393!1.04e-07!60;CL:0000211!1.04e-07!60;CL:0000048!1.07e-07!430;CL:0002620!1.52e-07!23;CL:0000723!2.22e-07!436;CL:0000187!2.40e-07!54;CL:0002334!9.90e-07!12 | |ontology_enrichment_celltype=CL:0000055!1.66e-24!180;CL:0000057!2.04e-16!75;CL:0000680!8.67e-09!57;CL:0000056!8.67e-09!57;CL:0000355!8.67e-09!57;CL:0000034!2.64e-08!444;CL:0000183!5.49e-08!59;CL:0000393!1.04e-07!60;CL:0000211!1.04e-07!60;CL:0000048!1.07e-07!430;CL:0002620!1.52e-07!23;CL:0000723!2.22e-07!436;CL:0000187!2.40e-07!54;CL:0002334!9.90e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000135;4.65e-10;3!CL:0000388;4.65e-10;3!CL:0002536;9.29e-08;2!CL:0002561;1.62e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.58e-10,76;CL:0000135,3.16e-10,3;CL:0000388,3.16e-10,3;CL:0002536,9.22e-08,2;CL:0002561,1.74e-07,2;CL:0000136,3.69e-07,15;CL:0000048,5.68e-07,427;CL:0000034,7.07e-07,441;CL:0002583,8.74e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.59e-07!14 | |ontology_enrichment_disease=DOID:2394!3.59e-07!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.12e-09!83;UBERON:0002329!1.12e-09!83;UBERON:0003077!1.12e-09!83;UBERON:0003059!1.12e-09!83;UBERON:0007282!1.12e-09!83;UBERON:0009618!1.12e-09!83;UBERON:0007285!1.12e-09!83;UBERON:0002385!2.20e-08!63;UBERON:0001015!2.20e-08!63;UBERON:0000383!2.20e-08!63;UBERON:0001134!2.21e-08!61;UBERON:0002036!2.21e-08!61;UBERON:0003082!2.21e-08!61;UBERON:0004290!8.12e-08!70 | |ontology_enrichment_uberon=UBERON:0000914!1.12e-09!83;UBERON:0002329!1.12e-09!83;UBERON:0003077!1.12e-09!83;UBERON:0003059!1.12e-09!83;UBERON:0007282!1.12e-09!83;UBERON:0009618!1.12e-09!83;UBERON:0007285!1.12e-09!83;UBERON:0002385!2.20e-08!63;UBERON:0001015!2.20e-08!63;UBERON:0000383!2.20e-08!63;UBERON:0001134!2.21e-08!61;UBERON:0002036!2.21e-08!61;UBERON:0003082!2.21e-08!61;UBERON:0004290!8.12e-08!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.65e-10;3!UBERON:0000043;4.65e-10;3!UBERON:0007845;4.65e-10;3!UBERON:0005406;1.45e-07;2!UBERON:0005933;1.62e-07;2!UBERON:0005942;1.62e-07;2!UBERON:0005932;1.62e-07;2!UBERON:0001013;2.17e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,3.16e-10,3;UBERON:0000043,3.16e-10,3;UBERON:0007845,3.16e-10,3;UBERON:0005406,1.23e-07,2;UBERON:0001013,1.54e-07,14;UBERON:0005933,1.74e-07,2;UBERON:0005942,1.74e-07,2;UBERON:0005932,1.74e-07,2 | |||
|phase1_expression=0.363356758541113,3.21150785836475,0.845726424575827,2.00146596706261,2.68176656656373,4.36169262050184,0,0,0,0,0,4.36882744260345,5.80287352102598,0.247532705920093,0.331397375727916,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.724232594804119,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,0,1.72101972449288,1.06400514659507,0.560677600142307,0,0,0,0.134710672069688,0,0.454072282934794,1.15235184896,0,0,0,0.597794722207204,0,0,0.140450806702248,0,0.245668634623536,0.103325781175765,1.18800285728205,2.22540236350701,0,2.15585442544872,0.336672227908132,0.500474079487857,0,0.438977620880838,1.83892677479412,1.50238058906597,0,0.358779271377724,0.640672166455702,0.423863802319124,1.20036438433761,0.412210116953756,1.03056216018252,0.37223371266318,0.843881661206331,0.876933046450788,1.26216887122057,0.736399189138395,0.969876340912871,2.4850671476163,0.403008392910561,0.169560592310488,0,0,0,0.365921118388786,0.530119073285941,0.116193942869518,0.725627385107593,1.00928340350251,0.36497735907583,0,0.643240938192885,0,3.25057549622385,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.517086863031111,0,0,0.531876233169741,2.08014873822732,0.257207374262142,0,0,0.857867961948885,1.08524321078289,0,0,0,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,1.44781306667579,1.2328579353023,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.713715955188647,0.157702415033935,0.117141414992713,0.601892199455438,6.82222512167955,1.03473071292505,0,0.921845842708516,0.781952530212746,0.587403472388222,1.37257369524342,0,0,0,0.303127571446259,4.99306318531491,6.35019615992329,0.496215615637554,0.61384789315225,1.96462066103151,0.640695746278505,0,0.160853921143607,2.96836132889982,1.54209693802656,1.24293207719189,0,0.519254429183621,0.697262270759755,0.483437798366489,0,0,0,0.728364672026868,0.786746489756545,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.193341436584244,0,0.767518373630648,0.413509717453592,0.859361958946189,2.46528379654188,0.426133137080504,0.445160178233687,0,0,0,0,0,1.25924938732256,0,0.308033580176089,0,0,0.18532421910392,0,0,0.632758849437452,0.38126038784765,0,0,0,0,0.179872457583315,1.09814811894422,0.706874414074119,0.202182481573316,0,0.421258456238981,1.46290121726877,0.487426979262569,1.05650146756755,0,0.424216295861138,0,0,1.32687795048244,0,0,1.9676842561399,0,0.6196469961995,1.12678241012897,0.286822704408103,0.196498082026242,0,1.06428319221179,1.26664581178598,1.31717957183961,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0,0.482259445395058,0.412618309791701,0.83088067605837,0,0,0,0,0,0.104909176269996,0,0,0,0.714695326373367,0,0,3.80099721227599,0,7.184921922407,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0,0,0.122026264901963,0,0,0,0.124192805882767,0,0,0,0,0,0,0,1.79105763464249,1.40227985908335,0,1.13641803165053,1.0062716070103,0,0.457680136793847,0.302461847526478,1.5543720058278,1.03498604992744,0.318593534327405,0.449803112163605,0.465788870628778,0.414706207840855,1.06336685823198,0.521745061811734,1.20206087197775,0,1.62748293281865,0.545545977607678,0.537052785212442,0.464033759878494,0.398095888698616,6.40044423461046,2.40376993627955,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848662649770126,0.850299680406731,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0.762764190934334,0,0,0.225630985047772,0.40341013740704,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0.351742488719241,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0.801711364730253,0,0.17071847709395,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0,1.1598144313382,1.94284397223656,0,0,0,0,0,0,0,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,1.0580536810308,4.09194519983426,1.84870251452567,2.16313281061895,0.378499274505237,0.327796715891087,0.253397002022874,0.305966489225945,0.26721740526556,0.459474497674225,0,0,0.267964130156178,0,0.103432995861895,0.426467963801962,0,0,0.0620747142958579,0,0,0,0.653150243690884,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0.363356758541113,3.21150785836475,0.845726424575827,2.00146596706261,2.68176656656373,4.36169262050184,0,0,0,0,0,4.36882744260345,5.80287352102598,0.247532705920093,0.331397375727916,0,0,0,0.487932798790507,0.123121058076788,0.204000691244253,0.313454721478088,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.724232594804119,0,0.486634870302636,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,0,1.72101972449288,1.06400514659507,0.560677600142307,0,0,0,0.134710672069688,0,0.454072282934794,1.15235184896,0,0,0,0.597794722207204,0,0,0.140450806702248,0,0.245668634623536,0.103325781175765,1.18800285728205,2.22540236350701,0,2.15585442544872,0.336672227908132,0.500474079487857,0,0.438977620880838,1.83892677479412,1.50238058906597,0,0.358779271377724,0.640672166455702,0.423863802319124,1.20036438433761,0.412210116953756,1.03056216018252,0.37223371266318,0.843881661206331,0.876933046450788,1.26216887122057,0.736399189138395,0.969876340912871,2.4850671476163,0.403008392910561,0.169560592310488,0,0,0,0.365921118388786,0.530119073285941,0.116193942869518,0.725627385107593,1.00928340350251,0.36497735907583,0,0.643240938192885,0,3.25057549622385,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0.43596006883328,0.1466765716419,0.517086863031111,0,0,0.531876233169741,2.08014873822732,0.257207374262142,0,0,0.857867961948885,1.08524321078289,0,0,0,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,1.44781306667579,1.2328579353023,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.713715955188647,0.157702415033935,0.117141414992713,0.601892199455438,6.82222512167955,1.03473071292505,0,0.921845842708516,0.781952530212746,0.587403472388222,1.37257369524342,0,0,0,0.303127571446259,4.99306318531491,6.35019615992329,0.496215615637554,0.61384789315225,1.96462066103151,0.640695746278505,0,0.160853921143607,2.96836132889982,1.54209693802656,1.24293207719189,0,0.519254429183621,0.697262270759755,0.483437798366489,0,0,0,0.728364672026868,0.786746489756545,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0.193341436584244,0,0.767518373630648,0.413509717453592,0.859361958946189,2.46528379654188,0.426133137080504,0.445160178233687,0,0,0,0,0,1.25924938732256,0,0.308033580176089,0,0,0.18532421910392,0,0,0.632758849437452,0.38126038784765,0,0,0,0,0.179872457583315,1.09814811894422,0.706874414074119,0.202182481573316,0,0.421258456238981,1.46290121726877,0.487426979262569,1.05650146756755,0,0.424216295861138,0,0,1.32687795048244,0,0,1.9676842561399,0,0.6196469961995,1.12678241012897,0.286822704408103,0.196498082026242,0,1.06428319221179,1.26664581178598,1.31717957183961,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,1.99613798001194,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0.230850775511391,0,0,0,0,0,0.641183153813036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0.288950589901519,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0,0,0,0.482259445395058,0.412618309791701,0.83088067605837,0,0,0,0,0,0.104909176269996,0,0,0,0.714695326373367,0,0,3.80099721227599,0,7.184921922407,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0,0,0.122026264901963,0,0,0,0.124192805882767,0,0,0,0,0,0,0,1.79105763464249,1.40227985908335,0,1.13641803165053,1.0062716070103,0,0.457680136793847,0.302461847526478,1.5543720058278,1.03498604992744,0.318593534327405,0.449803112163605,0.465788870628778,0.414706207840855,1.06336685823198,0.521745061811734,1.20206087197775,0,1.62748293281865,0.545545977607678,0.537052785212442,0.464033759878494,0.398095888698616,6.40044423461046,2.40376993627955,2.35724642136143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848662649770126,0.850299680406731,0,0,0,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0.762764190934334,0,0,0.225630985047772,0.40341013740704,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0.351742488719241,0,0,0,0,0,0,0,0.342976018874837,0,0,0,0,0.156986185701028,0,0.280272163313789,0,0,0,0.0714765441766563,0,0,0,0.801711364730253,0,0.17071847709395,0,0,0.118332000730565,0,0.423387050190929,0,0,0,0,0,0,0,0,1.1598144313382,1.94284397223656,0,0,0,0,0,0,0,0.437119121007915,0,0.245148321753905,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,1.0580536810308,4.09194519983426,1.84870251452567,2.16313281061895,0.378499274505237,0.327796715891087,0.253397002022874,0.305966489225945,0.26721740526556,0.459474497674225,0,0,0.267964130156178,0,0.103432995861895,0.426467963801962,0,0,0.0620747142958579,0,0,0,0.653150243690884,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr1:114523110..114523125,+ | |short_description=p@chr1:114523110..114523125,+ | ||
}} | }} |
Latest revision as of 19:57, 27 July 2015
Short description: | p@chr1:114523110..114523125, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:114523110..114523125, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.58e-10 | 76 |
fibrocyte | 3.16e-10 | 3 |
tendon cell | 3.16e-10 | 3 |
amniotic epithelial cell | 9.22e-08 | 2 |
outer root sheath cell | 1.74e-07 | 2 |
fat cell | 3.69e-07 | 15 |
multi fate stem cell | 5.68e-07 | 427 |
stem cell | 7.07e-07 | 441 |
subcutaneous preadipocyte | 8.74e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 3.16e-10 | 3 |
tendon | 3.16e-10 | 3 |
regular connective tissue | 3.16e-10 | 3 |
perirenal fat | 1.23e-07 | 2 |
adipose tissue | 1.54e-07 | 14 |
hair root sheath | 1.74e-07 | 2 |
hair outer root sheath | 1.74e-07 | 2 |
bulb of hair follicle | 1.74e-07 | 2 |