FFCP PHASE1:Hg19::chr1:14030235..14030264,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:14030235..14030264,+ | |||
|coexpression_cluster_id=C3856 | |||
|description=CAGE_peak_at_chr1:14030235..14030264,+ | |description=CAGE_peak_at_chr1:14030235..14030264,+ | ||
|id=chr1:14030235..14030264,+ | |id=chr1:14030235..14030264,+ | ||
|ontology_enrichment_celltype=CL:0000945!2.70e-53!24;CL:0000826!2.70e-53!24;CL:0000542!9.67e-26!53;CL:0000051!9.67e-26!53;CL:0000838!6.53e-23!52;CL:0000236!1.56e-20!14;CL:0000738!6.27e-16!140;CL:0002087!5.63e-14!119;CL:0000785!4.40e-13!2;CL:0000955!4.40e-13!2;CL:0000818!4.40e-13!2;CL:0000954!4.40e-13!2;CL:0000816!4.40e-13!2;CL:0000037!3.94e-12!172;CL:0000566!3.94e-12!172;CL:0000988!3.22e-11!182;CL:0002031!2.89e-10!124;CL:0002032!3.27e-10!165;CL:0000837!3.27e-10!165;CL:0000817!5.19e-09!3;CL:0000819!1.12e-07!1;CL:0000946!4.34e-07!1;CL:0000786!4.34e-07!1;CL:0000980!4.34e-07!1 | |ontology_enrichment_celltype=CL:0000945!2.70e-53!24;CL:0000826!2.70e-53!24;CL:0000542!9.67e-26!53;CL:0000051!9.67e-26!53;CL:0000838!6.53e-23!52;CL:0000236!1.56e-20!14;CL:0000738!6.27e-16!140;CL:0002087!5.63e-14!119;CL:0000785!4.40e-13!2;CL:0000955!4.40e-13!2;CL:0000818!4.40e-13!2;CL:0000954!4.40e-13!2;CL:0000816!4.40e-13!2;CL:0000037!3.94e-12!172;CL:0000566!3.94e-12!172;CL:0000988!3.22e-11!182;CL:0002031!2.89e-10!124;CL:0002032!3.27e-10!165;CL:0000837!3.27e-10!165;CL:0000817!5.19e-09!3;CL:0000819!1.12e-07!1;CL:0000946!4.34e-07!1;CL:0000786!4.34e-07!1;CL:0000980!4.34e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000945;4.96e-33;24!CL:0000236;2.11e-27;13!CL:0000785;1.67e-23;1!CL:0000819;1.67e-23;1!CL:0000542;2.15e-13;53!CL:0002087;4.40e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.24e-33,24;CL:0000826,5.24e-33,24;CL:0000236,1.74e-25,14;CL:0000819,1.67e-23,1;CL:0000542,3.07e-20,53;CL:0000051,3.07e-20,53;CL:0000838,2.62e-15,52;CL:0000785,1.85e-12,2;CL:0000955,1.85e-12,2;CL:0000818,1.85e-12,2;CL:0000954,1.85e-12,2;CL:0000816,1.85e-12,2;CL:0002087,3.47e-09,115;CL:0000817,9.66e-09,3;CL:0000738,9.62e-08,136 | |||
|ontology_enrichment_development_v019=CL:0000051;2.15e-13;53!CL:0000954;1.85e-12;2 | |||
|ontology_enrichment_disease=DOID:0060058!2.45e-15!10;DOID:0060073!1.12e-07!1;DOID:8675!1.12e-07!1;DOID:12603!1.54e-07!1;DOID:630!3.62e-07!1;DOID:0050177!3.62e-07!1;DOID:0050427!3.62e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060058;7.31e-36;10!DOID:0060073;1.67e-23;1!DOID:8675;1.67e-23;1!DOID:12603;5.73e-23;1!DOID:2531;9.13e-07;51!DOID:0060083;9.13e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,7.31e-36,10;DOID:0060073,1.67e-23,1;DOID:8675,1.67e-23,1;DOID:12603,5.13e-23,1;DOID:2531,4.68e-11,51;DOID:0060083,4.68e-11,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!9.23e-21!7;UBERON:0002106!3.39e-18!3;UBERON:0004854!3.39e-18!3;UBERON:0009034!3.39e-18!3;UBERON:0002095!3.39e-18!3;UBERON:0004782!3.39e-18!3;UBERON:0003281!3.39e-18!3;UBERON:0009664!3.39e-18!3;UBERON:0002296!3.39e-18!3;UBERON:0005602!3.39e-18!3;UBERON:0001179!3.39e-18!3;UBERON:0006293!3.39e-18!3;UBERON:0002372!3.21e-07!1;UBERON:0001961!3.21e-07!1;UBERON:0001744!3.21e-07!1;UBERON:0001735!3.21e-07!1;UBERON:0000945!3.93e-07!8;UBERON:0010039!3.93e-07!8;UBERON:0002370!9.11e-07!4;UBERON:0005058!9.11e-07!4;UBERON:0009113!9.11e-07!4;UBERON:0003295!9.11e-07!4;UBERON:0005562!9.11e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;9.66e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,8.96e-09,3;UBERON:0004854,8.96e-09,3;UBERON:0009034,8.96e-09,3;UBERON:0002095,8.96e-09,3;UBERON:0004782,8.96e-09,3;UBERON:0003281,8.96e-09,3;UBERON:0009664,8.96e-09,3;UBERON:0002296,8.96e-09,3;UBERON:0005602,8.96e-09,3;UBERON:0001179,8.96e-09,3;UBERON:0006293,8.96e-09,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.410502947249729,0.314843125254717,0,0.767658796194425,0,0,0,0,0.154934401160603,28.2916772649969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.426730222566507,0,0,0,0,2.27685187643779,7.6340834618222,3.82273228125229,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48642540100575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3332049754883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,17.1727563717063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.0644578879735772,17.3897611309376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.682821857254437,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.410502947249729,0.314843125254717,0,0.767658796194425,0,0,0,0,0.154934401160603,28.2916772649969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0.426730222566507,0,0,0,0,2.27685187643779,7.6340834618222,3.82273228125229,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48642540100575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.3332049754883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.395223263795889,17.1727563717063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.0644578879735772,17.3897611309376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0645889098360061,0.682821857254437,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p@chr1:14030235..14030264,+ | |short_description=p@chr1:14030235..14030264,+ | ||
}} | }} |
Latest revision as of 20:37, 27 July 2015
Short description: | p@chr1:14030235..14030264, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:14030235..14030264, + |
Coexpression cluster: | C3856_Burkitt_lymphoma_splenic_diffuse_CD19_plasma_xeroderma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.24e-33 | 24 |
pro-B cell | 5.24e-33 | 24 |
B cell | 1.74e-25 | 14 |
B-1 B cell | 1.67e-23 | 1 |
lymphocyte | 3.07e-20 | 53 |
common lymphoid progenitor | 3.07e-20 | 53 |
lymphoid lineage restricted progenitor cell | 2.62e-15 | 52 |
mature B cell | 1.85e-12 | 2 |
pre-B-II cell | 1.85e-12 | 2 |
transitional stage B cell | 1.85e-12 | 2 |
small pre-B-II cell | 1.85e-12 | 2 |
immature B cell | 1.85e-12 | 2 |
nongranular leukocyte | 3.47e-09 | 115 |
precursor B cell | 9.66e-09 | 3 |
leukocyte | 9.62e-08 | 136 |
Ontology term | p-value | n |
---|---|---|
spleen | 8.96e-09 | 3 |
gastrointestinal system mesentery | 8.96e-09 | 3 |
stomach region | 8.96e-09 | 3 |
mesentery | 8.96e-09 | 3 |
gastrointestinal system serosa | 8.96e-09 | 3 |
mesentery of stomach | 8.96e-09 | 3 |
gut mesentery | 8.96e-09 | 3 |
dorsal mesentery | 8.96e-09 | 3 |
dorsal mesogastrium | 8.96e-09 | 3 |
peritoneal cavity | 8.96e-09 | 3 |
spleen primordium | 8.96e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 7.31e-36 | 10 |
lymphatic system cancer | 1.67e-23 | 1 |
lymphosarcoma | 1.67e-23 | 1 |
acute leukemia | 5.13e-23 | 1 |
hematologic cancer | 4.68e-11 | 51 |
immune system cancer | 4.68e-11 | 51 |