FFCP PHASE1:Hg19::chr1:56990054..56990076,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:56990054..56990076,- | |||
|coexpression_cluster_id=C666 | |||
|description=CAGE_peak_at_chr1:56990054..56990076,- | |description=CAGE_peak_at_chr1:56990054..56990076,- | ||
|id=chr1:56990054..56990076,- | |id=chr1:56990054..56990076,- | ||
|ontology_enrichment_celltype=CL:0000057!8.63e-14!75;CL:0002620!1.19e-08!23 | |ontology_enrichment_celltype=CL:0000057!8.63e-14!75;CL:0002620!1.19e-08!23 | ||
|ontology_enrichment_celltype_v019=CL:0000135;1.82e-13;3!CL:0000388;1.82e-13;3!CL:0000153;4.85e-11;9!CL:0000447;4.85e-11;9!CL:0000499;3.96e-10;28!CL:0000327;5.45e-09;15!CL:0002617;7.97e-09;2!CL:0000136;2.86e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.88e-13,3;CL:0000388,1.88e-13,3;CL:0000153,2.97e-11,9;CL:0000447,2.97e-11,9;CL:0000499,2.70e-10,28;CL:0000327,3.31e-09,15;CL:0000136,8.05e-09,15;CL:0002617,1.25e-08,2;CL:0000057,7.19e-08,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.39e-15!115;UBERON:0000475!2.62e-09!365;UBERON:0000468!6.59e-09!659;UBERON:0003102!2.54e-07!95 | |ontology_enrichment_uberon=UBERON:0007023!7.39e-15!115;UBERON:0000475!2.62e-09!365;UBERON:0000468!6.59e-09!659;UBERON:0003102!2.54e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;1.82e-13;3!UBERON:0000043;1.82e-13;3!UBERON:0007845;1.82e-13;3!UBERON:0000341;1.83e-08;2!UBERON:0004905;3.55e-08;8!UBERON:0000982;3.55e-08;8!UBERON:0004770;3.55e-08;8!UBERON:0004457;1.85e-07;9!UBERON:0000042;1.85e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.88e-13,3;UBERON:0000043,1.88e-13,3;UBERON:0007845,1.88e-13,3;UBERON:0000341,1.84e-08,2;UBERON:0004905,2.23e-08,8;UBERON:0000982,2.23e-08,8;UBERON:0004770,2.23e-08,8 | |||
|phase1_expression=1.09007027562334,2.78330681058278,0.704772020479856,3.00219895059391,0,1.74467704820074,0,0.631719873426831,1.30592814099919,0,0,0.218441372130172,0,0.123766352960047,0.662794751455832,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0.0764134057479513,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.818718450173537,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.44575660953827,1.50401373190767,3.0417768981773,0,0.486634870302636,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.286836620748814,0,1.12135520028461,0,0,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0.413303124703062,1.18800285728205,1.7308685049499,0.910161361938026,0,0,0.250237039743928,0,0.438977620880838,1.22595118319608,0.600952235626387,0,0.717558542755448,0.85422955527427,0.847727604638247,0,0.515262646192195,0.257640540045629,0.18611685633159,0.337552664482532,0.876933046450788,1.00973509697646,1.19664868234989,4.68773564774555,1.42003837006646,0.503760491138201,0.339121184620975,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0,0,3.12899064659632,0.643240938192885,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,2.17048642156577,0,0,0,0,0,0,0,1.2162378064119,0,0,0,1.14861935834114,0,0.723906533337896,1.2328579353023,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,1.47229790062968,1.50051156317903,0,1.24782516918484,2.85486382075459,0.315404830067869,0.702848489956279,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0.992431231275107,0.153461973288062,1.12264037773229,0.256278298511402,1.02341449813341,0,0,0.154209693802656,0,0.492762936082855,1.03850885836724,0.929683027679674,0.120859449591622,0.200506470303285,0,0.114814448164607,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0,0,0,0,0.48335359146061,0,0.15350367472613,0.137836572484531,0.107420244868274,1.0151168573996,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0.511795582622668,0.855877976067841,0,0,0,0,0,0,0,0.421258456238981,0,0.731140468893853,0,0,0.565621727814851,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,6.33322905892992,8.89096210991735,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.296964680832639,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0.690503839458535,0,0,0.969332746095218,1.20598527610407,0,0.260427761085233,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0,0,0,0.538651809526579,0,0,0,0.108647371922008,0.31900115973192,0.183195186803725,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,0.176915129006678,0,0,0,0.104421949505455,0.067401132980677,1.60515529459758,0.702793337176017,0,0,0,0,0,0.30607276163049,0.442306057399416,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.290967049465258,0,0.451961481561065,0.137041924646751,0,0.253243183823515,0.195551382734803,0,1.06726497369676,0,0,0,0,0.14405479798815,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,1.11712960508902,0.229160424011684,0,0.399358000997982,0.429226048136571,0,0.0671834724867263,0,0,0.157566364614447,0.247247575143499,0.13480708770837,0.0984274815147488,0,0.795229689809303,0.544813624446302,0.160753148465019,0.137539436597234,0,0,0,0.182248669974074,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,1.02232813071253,0.113312091520126,0.439656701034247,1.32506888912221,0.387848869084652,0.26446520348538,0,0,0.320362237703084,0.78602152549833,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0,1.09823638411767,0.250381861413,0.573409195690071,0.221858103073705,0.18628920882415,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0,0.754703705257725,3.55924488638614,0.228840068396924,0.302461847526478,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0.796191777397232,0.400027764663154,0.343395705182793,1.34699795506368,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82140754952547,0.6124909547064,0,0,0.159633859057151,0.41023272848151,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0.20170506870352,0,0,0.655087670040387,0,0.0675375846183947,0.781078098613847,0.620060389503552,0,0,0.548257766857182,2.48105589194647,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.131545547125698,0,0.111231401892069,0.235479278551542,0.314231179832004,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0.207216164163037,0.17071847709395,0.691259661814092,0,0,0,2.11693525095465,0.22910686854405,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0.154348316215889,0.437119121007915,0,0.490296643507811,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0.458729283404541,0,0,0.271965960763659,0,0,5.20793025433452,9.70568820125978,4.32626562123789,0,0.218531143927391,0,0,0.26721740526556,0,0.250707539292375,0.530450887527676,0.803892390468535,0.829169439458779,0.413731983447581,1.27940389140589,1.1903221573187,0.129177819672012,0.0620747142958579,0,0.509177266225319,0.808468755832877,0.870866991587845,0,0.134704106029175,0.0717222053926763,0.99798106963804,0,0.106727345877715,0,0,0,0.122241444182866,0.813792356631477,0,0.201273793591026,0 | |phase1_expression=1.09007027562334,2.78330681058278,0.704772020479856,3.00219895059391,0,1.74467704820074,0,0.631719873426831,1.30592814099919,0,0,0.218441372130172,0,0.123766352960047,0.662794751455832,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0.0764134057479513,0.164201178899891,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0.818718450173537,0,0,0,0,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,1.44575660953827,1.50401373190767,3.0417768981773,0,0.486634870302636,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25326102332916,0.132409180813219,0.286836620748814,0,1.12135520028461,0,0,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0.140450806702248,0,0,0.413303124703062,1.18800285728205,1.7308685049499,0.910161361938026,0,0,0.250237039743928,0,0.438977620880838,1.22595118319608,0.600952235626387,0,0.717558542755448,0.85422955527427,0.847727604638247,0,0.515262646192195,0.257640540045629,0.18611685633159,0.337552664482532,0.876933046450788,1.00973509697646,1.19664868234989,4.68773564774555,1.42003837006646,0.503760491138201,0.339121184620975,0,0,0,0.121973706129595,0,0.232387885739037,0.10366105501537,0,0,3.12899064659632,0.643240938192885,0,0.464367928031979,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,1.26755034821831,0,0.590789906681404,0,0.122988438543114,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0.266422179016099,0,2.17048642156577,0,0,0,0,0,0,0,1.2162378064119,0,0,0,1.14861935834114,0,0.723906533337896,1.2328579353023,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,1.47229790062968,1.50051156317903,0,1.24782516918484,2.85486382075459,0.315404830067869,0.702848489956279,0,0,0,0,0,0.173767228936166,0.195801157462741,0,0,0,0,0,0,0.604780586659361,0.992431231275107,0.153461973288062,1.12264037773229,0.256278298511402,1.02341449813341,0,0,0.154209693802656,0,0.492762936082855,1.03850885836724,0.929683027679674,0.120859449591622,0.200506470303285,0,0.114814448164607,0,0.524497659837696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.824328093181778,0.0915694648183434,0,0,0,0,0.48335359146061,0,0.15350367472613,0.137836572484531,0.107420244868274,1.0151168573996,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0.190630193923825,0.511795582622668,0.855877976067841,0,0,0,0,0,0,0,0.421258456238981,0,0.731140468893853,0,0,0.565621727814851,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,6.33322905892992,8.89096210991735,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0.296964680832639,0,0,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0.690503839458535,0,0,0.969332746095218,1.20598527610407,0,0.260427761085233,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.331737779793674,0,0,0,0,0.538651809526579,0,0,0,0.108647371922008,0.31900115973192,0.183195186803725,1.5991043280559,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,0.176915129006678,0,0,0,0.104421949505455,0.067401132980677,1.60515529459758,0.702793337176017,0,0,0,0,0,0.30607276163049,0.442306057399416,0,0,0,0,0.313932918407225,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.290967049465258,0,0.451961481561065,0.137041924646751,0,0.253243183823515,0.195551382734803,0,1.06726497369676,0,0,0,0,0.14405479798815,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,1.11712960508902,0.229160424011684,0,0.399358000997982,0.429226048136571,0,0.0671834724867263,0,0,0.157566364614447,0.247247575143499,0.13480708770837,0.0984274815147488,0,0.795229689809303,0.544813624446302,0.160753148465019,0.137539436597234,0,0,0,0.182248669974074,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0.542999601753713,0,0.326587360109409,0,0,1.02232813071253,0.113312091520126,0.439656701034247,1.32506888912221,0.387848869084652,0.26446520348538,0,0,0.320362237703084,0.78602152549833,0.414239055347196,0,0,0,0,0,0,0,0.327872630709804,0,0,1.09823638411767,0.250381861413,0.573409195690071,0.221858103073705,0.18628920882415,0,0,0,0.285465333544967,0,0,0,0.149254802886874,0,0,0,0.754703705257725,3.55924488638614,0.228840068396924,0.302461847526478,0,0.147855149989634,0,0.449803112163605,0,0,0,0,0,0,0,0.181848659202559,0.107410557042488,0,0.796191777397232,0.400027764663154,0.343395705182793,1.34699795506368,0,0,0,0,0.226705925512272,0,0.244736704506468,0,0,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82140754952547,0.6124909547064,0,0,0.159633859057151,0.41023272848151,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0.300841313397029,0.20170506870352,0,0,0.655087670040387,0,0.0675375846183947,0.781078098613847,0.620060389503552,0,0,0.548257766857182,2.48105589194647,0,0,0,0,0,0,0.0887023701626388,0,0,0,0.131545547125698,0,0.111231401892069,0.235479278551542,0.314231179832004,0,0.913158720509496,0,0,0.357382720883282,0,0,0,0,0.207216164163037,0.17071847709395,0.691259661814092,0,0,0,2.11693525095465,0.22910686854405,0,0,0,0,0,0,0.102662806856247,1.1598144313382,0,0,0,0,0,0,0,0.154348316215889,0.437119121007915,0,0.490296643507811,0,0,0,0.4226557275834,0.169927114687817,0,0,0,0,0,0,0,0.458729283404541,0,0,0.271965960763659,0,0,5.20793025433452,9.70568820125978,4.32626562123789,0,0.218531143927391,0,0,0.26721740526556,0,0.250707539292375,0.530450887527676,0.803892390468535,0.829169439458779,0.413731983447581,1.27940389140589,1.1903221573187,0.129177819672012,0.0620747142958579,0,0.509177266225319,0.808468755832877,0.870866991587845,0,0.134704106029175,0.0717222053926763,0.99798106963804,0,0.106727345877715,0,0,0,0.122241444182866,0.813792356631477,0,0.201273793591026,0 | ||
|short_description=p@chr1:56990054..56990076,- | |short_description=p@chr1:56990054..56990076,- | ||
}} | }} |
Latest revision as of 09:19, 28 July 2015
Short description: | p@chr1:56990054..56990076, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:56990054..56990076, - |
Coexpression cluster: | C666_tenocyte_Synoviocyte_Fibroblast_Chondrocyte_Nucleus_normal_mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.88e-13 | 3 |
tendon cell | 1.88e-13 | 3 |
GAG secreting cell | 2.97e-11 | 9 |
carbohydrate secreting cell | 2.97e-11 | 9 |
stromal cell | 2.70e-10 | 28 |
extracellular matrix secreting cell | 3.31e-09 | 15 |
fat cell | 8.05e-09 | 15 |
adipocyte of breast | 1.25e-08 | 2 |
fibroblast | 7.19e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.88e-13 | 3 |
tendon | 1.88e-13 | 3 |
regular connective tissue | 1.88e-13 | 3 |
throat | 1.84e-08 | 2 |
articulation | 2.23e-08 | 8 |
skeletal joint | 2.23e-08 | 8 |
articular system | 2.23e-08 | 8 |