FFCP PHASE1:Hg19::chr3:170444463..170444486,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:170444463..170444486,- | |||
|coexpression_cluster_id=C886 | |||
|description=CAGE_peak_at_chr3:170444463..170444486,- | |description=CAGE_peak_at_chr3:170444463..170444486,- | ||
|id=chr3:170444463..170444486,- | |id=chr3:170444463..170444486,- | ||
|ontology_enrichment_celltype=CL:0000055!1.91e-23!180;CL:0000680!1.55e-16!57;CL:0000056!1.55e-16!57;CL:0000355!1.55e-16!57;CL:0000222!1.43e-14!119;CL:0000187!2.32e-14!54;CL:0000192!6.55e-13!42;CL:0000514!6.55e-13!42;CL:0000393!9.75e-13!60;CL:0000211!9.75e-13!60;CL:0000057!2.40e-12!75;CL:0000183!2.81e-12!59;CL:0000220!3.39e-11!246;CL:0000548!3.61e-11!679;CL:0000004!3.61e-11!679;CL:0000255!3.61e-11!679;CL:0002321!6.28e-11!248;CL:0000012!6.56e-11!682;CL:0000077!1.52e-09!19;CL:0000144!8.89e-09!625;CL:0000359!1.27e-08!32;CL:0000003!4.45e-08!722;CL:0000076!6.60e-08!62;CL:0002620!1.67e-07!23 | |ontology_enrichment_celltype=CL:0000055!1.91e-23!180;CL:0000680!1.55e-16!57;CL:0000056!1.55e-16!57;CL:0000355!1.55e-16!57;CL:0000222!1.43e-14!119;CL:0000187!2.32e-14!54;CL:0000192!6.55e-13!42;CL:0000514!6.55e-13!42;CL:0000393!9.75e-13!60;CL:0000211!9.75e-13!60;CL:0000057!2.40e-12!75;CL:0000183!2.81e-12!59;CL:0000220!3.39e-11!246;CL:0000548!3.61e-11!679;CL:0000004!3.61e-11!679;CL:0000255!3.61e-11!679;CL:0002321!6.28e-11!248;CL:0000012!6.56e-11!682;CL:0000077!1.52e-09!19;CL:0000144!8.89e-09!625;CL:0000359!1.27e-08!32;CL:0000003!4.45e-08!722;CL:0000076!6.60e-08!62;CL:0002620!1.67e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0002582;2.74e-09;3!CL:0002592;5.06e-09;3!CL:0000511;2.20e-07;1!CL:0002625;2.20e-07;1!CL:0000216;2.20e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002582,4.15e-09,3;CL:0002592,5.97e-09,3;CL:0000511,1.10e-07,1;CL:0002625,1.10e-07,1;CL:0000216,1.10e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1749;4.19e-11;14!DOID:0060085;2.20e-07;1!DOID:3165;2.20e-07;1!DOID:0060121;2.20e-07;1!DOID:2438;2.20e-07;1!DOID:4418;2.20e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.22e-11,14;DOID:0060085,1.95e-07,1;DOID:3165,1.95e-07,1;DOID:0060121,1.95e-07,1;DOID:2438,1.95e-07,1;DOID:4418,1.95e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.18e-18!83;UBERON:0002329!1.18e-18!83;UBERON:0003077!1.18e-18!83;UBERON:0003059!1.18e-18!83;UBERON:0007282!1.18e-18!83;UBERON:0009618!1.18e-18!83;UBERON:0007285!1.18e-18!83;UBERON:0000486!6.85e-17!82;UBERON:0004290!1.30e-16!70;UBERON:0001134!1.07e-14!61;UBERON:0002036!1.07e-14!61;UBERON:0003082!1.07e-14!61;UBERON:0002385!7.11e-14!63;UBERON:0001015!7.11e-14!63;UBERON:0000383!7.11e-14!63;UBERON:0005256!3.57e-13!143;UBERON:0000490!1.04e-08!138;UBERON:0003102!2.78e-08!95;UBERON:0001637!3.31e-07!42;UBERON:0003509!3.31e-07!42;UBERON:0004572!3.31e-07!42;UBERON:0002100!8.60e-07!216 | |ontology_enrichment_uberon=UBERON:0000914!1.18e-18!83;UBERON:0002329!1.18e-18!83;UBERON:0003077!1.18e-18!83;UBERON:0003059!1.18e-18!83;UBERON:0007282!1.18e-18!83;UBERON:0009618!1.18e-18!83;UBERON:0007285!1.18e-18!83;UBERON:0000486!6.85e-17!82;UBERON:0004290!1.30e-16!70;UBERON:0001134!1.07e-14!61;UBERON:0002036!1.07e-14!61;UBERON:0003082!1.07e-14!61;UBERON:0002385!7.11e-14!63;UBERON:0001015!7.11e-14!63;UBERON:0000383!7.11e-14!63;UBERON:0005256!3.57e-13!143;UBERON:0000490!1.04e-08!138;UBERON:0003102!2.78e-08!95;UBERON:0001637!3.31e-07!42;UBERON:0003509!3.31e-07!42;UBERON:0004572!3.31e-07!42;UBERON:0002100!8.60e-07!216 | ||
|ontology_enrichment_uberon_v019=UBERON:0003498;5.06e-09;3!UBERON:0005985;5.06e-09;3!UBERON:0001621;5.06e-09;3!UBERON:0001136;2.20e-07;1!UBERON:0001343;2.20e-07;1!UBERON:0004910;2.20e-07;1!UBERON:0004813;2.20e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001621,5.97e-09,3;UBERON:0001136,1.10e-07,1;UBERON:0001343,1.10e-07,1;UBERON:0004910,1.10e-07,1;UBERON:0005154,1.10e-07,1;UBERON:0005295,1.10e-07,1;UBERON:0004813,1.10e-07,1;UBERON:0005297,1.10e-07,1;UBERON:0005294,1.10e-07,1;UBERON:0010141,1.10e-07,1;UBERON:0005891,1.10e-07,1 | |||
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|short_description=p@chr3:170444463..170444486,- | |short_description=p@chr3:170444463..170444486,- | ||
}} | }} |
Latest revision as of 18:12, 29 July 2015
Short description: | p@chr3:170444463..170444486, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:170444463..170444486, - |
Coexpression cluster: | C886_large_endometrial_Fibroblast_renal_hepatoblastoma_hepatocellular_squamous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
visceral preadipocyte | 4.15e-09 | 3 |
smooth muscle cell of the coronary artery | 5.97e-09 | 3 |
androgen binding protein secreting cell | 1.10e-07 | 1 |
seminiferous tubule epithelial cell | 1.10e-07 | 1 |
Sertoli cell | 1.10e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
coronary artery | 5.97e-09 | 3 |
mesothelium | 1.10e-07 | 1 |
seminiferous tubule of testis | 1.10e-07 | 1 |
epithelium of male gonad | 1.10e-07 | 1 |
epithelial cord | 1.10e-07 | 1 |
sex cord | 1.10e-07 | 1 |
seminiferous tubule epithelium | 1.10e-07 | 1 |
testis sex cord | 1.10e-07 | 1 |
genital ridge | 1.10e-07 | 1 |
primitive sex cord of indifferent gonad | 1.10e-07 | 1 |
coelomic epithelium | 1.10e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.22e-11 | 14 |
organ system benign neoplasm | 1.95e-07 | 1 |
skin benign neoplasm | 1.95e-07 | 1 |
integumentary system benign neoplasm | 1.95e-07 | 1 |
dermis tumor | 1.95e-07 | 1 |
cutaneous fibrous histiocytoma | 1.95e-07 | 1 |