FFCP PHASE1:Hg19::chr3:194445234..194445270,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:194445234..194445270,+ | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_at_chr3:194445234..194445270,+ | |description=CAGE_peak_at_chr3:194445234..194445270,+ | ||
Latest revision as of 19:41, 29 July 2015
| Short description: | p@chr3:194445234..194445270, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr3:194445234..194445270, + |
| Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
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CAGE Expression
| Sample | p@chr3:194445234..194445270+ |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
15.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| chorionic membrane mesenchymal stem cell | 5.41e-147 | 3 |
| extraembryonic cell | 3.83e-42 | 19 |
| amnion mesenchymal stem cell | 3.26e-11 | 5 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| egg chorion | 5.41e-147 | 3 |
| chorion | 8.52e-64 | 7 |
| extraembryonic membrane | 9.13e-57 | 14 |
| membranous layer | 9.13e-57 | 14 |
| extraembryonic structure | 1.33e-33 | 24 |
| organ component layer | 7.62e-13 | 66 |
| amnion | 2.18e-08 | 7 |
| somatic layer of lateral plate mesoderm | 1.69e-07 | 8 |
Showing 1 to 8 of 8 entries
