FFCP PHASE1:Hg19::chr3:54925405..54925424,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:54925405..54925424,+ | |||
|coexpression_cluster_id=C393 | |coexpression_cluster_id=C393 | ||
|description=CAGE_peak_at_chr3:54925405..54925424,+ | |description=CAGE_peak_at_chr3:54925405..54925424,+ | ||
|id=chr3:54925405..54925424,+ | |id=chr3:54925405..54925424,+ | ||
|ontology_enrichment_celltype=CL:0000349!9.78e-08!3;CL:0002577!9.78e-08!3;CL:0002541!1.55e-07!3;CL:0002537!2.52e-07!5;CL:0002150!3.00e-07!3;CL:0000861!3.00e-07!3;CL:0000039!3.22e-07!7;CL:0000586!3.22e-07!7 | |ontology_enrichment_celltype=CL:0000349!9.78e-08!3;CL:0002577!9.78e-08!3;CL:0002541!1.55e-07!3;CL:0002537!2.52e-07!5;CL:0002150!3.00e-07!3;CL:0000861!3.00e-07!3;CL:0000039!3.22e-07!7;CL:0000586!3.22e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.78e-54;19!CL:0002577;1.46e-27;3!CL:0002541;9.38e-27;3!CL:0002536;1.56e-18;2!CL:0002537;8.33e-17;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.42e-54,19;CL:0002577,1.34e-27,3;CL:0002541,9.40e-27,3;CL:0002536,1.10e-18,2;CL:0002537,8.57e-17,5 | |||
|ontology_enrichment_development_v019=UBERON:0008801;6.91e-10;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.21e-24!14;UBERON:0000158!1.21e-24!14;UBERON:0001737!4.92e-18!9;UBERON:0003124!2.40e-15!7;UBERON:0000478!9.24e-13!24;UBERON:0000305!3.84e-11!7;UBERON:0004871!1.28e-09!8;UBERON:0001987!1.73e-09!4;UBERON:0004340!1.73e-09!4;UBERON:0001557!3.74e-09!19;UBERON:0001004!2.42e-08!72;UBERON:0000476!1.55e-07!3;UBERON:0000920!1.55e-07!3;UBERON:0000077!4.66e-07!130;UBERON:0004175!5.00e-07!25;UBERON:0004923!5.57e-07!57 | |ontology_enrichment_uberon=UBERON:0005631!1.21e-24!14;UBERON:0000158!1.21e-24!14;UBERON:0001737!4.92e-18!9;UBERON:0003124!2.40e-15!7;UBERON:0000478!9.24e-13!24;UBERON:0000305!3.84e-11!7;UBERON:0004871!1.28e-09!8;UBERON:0001987!1.73e-09!4;UBERON:0004340!1.73e-09!4;UBERON:0001557!3.74e-09!19;UBERON:0001004!2.42e-08!72;UBERON:0000476!1.55e-07!3;UBERON:0000920!1.55e-07!3;UBERON:0000077!4.66e-07!130;UBERON:0004175!5.00e-07!25;UBERON:0004923!5.57e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.89e-55;10!UBERON:0000158;2.89e-55;10!UBERON:0000478;8.67e-43;24!UBERON:0000305;1.21e-31;7!UBERON:0003124;9.38e-27;3!UBERON:0000920;9.38e-27;3!UBERON:0001987;7.72e-21;4!UBERON:0001737;2.12e-15;9!UBERON:0001557;2.12e-15;9!UBERON:0001831;6.91e-10;1!UBERON:0001567;6.91e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.25e-74,14;UBERON:0000158,1.25e-74,14;UBERON:0003124,5.44e-45,7;UBERON:0000478,7.26e-43,24;UBERON:0000305,9.76e-32,7;UBERON:0004871,9.05e-28,8;UBERON:0000920,9.40e-27,3;UBERON:0001987,7.24e-21,4;UBERON:0004340,7.24e-21,4;UBERON:0001737,1.51e-15,9;UBERON:0004923,1.75e-14,66;UBERON:0001831,4.44e-10,1;UBERON:0001567,4.44e-10,1;UBERON:0008801,4.44e-10,1;UBERON:0001557,1.85e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.02415155899396,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.946454400318751,1.85443159085912,0.482022059766964,0.992645754591546,1.52515610864684,0.237270619111097,0.943819157121151,1.56977172100277,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,1.03473071292505,0,0,0,0,0,0,0,0,2.42502057157008,13.3148351608398,7.86214762657169,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0.284136146806413,4.29740072527842,15.1451987224646,3.37876772309155,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0.139423744278603,0,0,0.46112780877612,0.179515288819544,4.45454224880233,1.27600463892768,2.10674464824283,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0.52418000472609,0,0.677294319023596,1.24251839046515,1.23173185579814,0,0,0,0,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0.418411385249333,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0.192619830407303,0.214441591374926,0,0,0.231522474323834,0.244736704506468,0.537266523244462,0,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0.523813388962845,0,0,0,0,0,0,0,1.64477330057155,0,0,0.127762427639595,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0.860454717640555,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0.157771562193185,0.0679914901909147,0,0,0,0,0.432626562123789,0,0.218531143927391,0,0.713921808193872,0,1.01084389488329,0,0.454672189309436,1.07185652062471,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0.358611026963382,0.665320713092027,0.0814032686109745,0,0,0,0,0.122241444182866,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,5.02415155899396,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0.408308342509787,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0.721879481669586,0.946454400318751,1.85443159085912,0.482022059766964,0.992645754591546,1.52515610864684,0.237270619111097,0.943819157121151,1.56977172100277,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,1.06617584622764,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.468565659970853,0,0,1.03473071292505,0,0,0,0,0,0,0,0,2.42502057157008,13.3148351608398,7.86214762657169,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0.284136146806413,4.29740072527842,15.1451987224646,3.37876772309155,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0.358042349351218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0.139423744278603,0,0,0.46112780877612,0.179515288819544,4.45454224880233,1.27600463892768,2.10674464824283,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0.52418000472609,0,0.677294319023596,1.24251839046515,1.23173185579814,0,0,0,0,0,0,0,0,0,0.39961921916426,0,0,0,0,0,0,0,0.418411385249333,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0.192619830407303,0.214441591374926,0,0,0.231522474323834,0.244736704506468,0.537266523244462,0,0.438568099157414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0.0752103283492573,0,0,0.523813388962845,0,0,0,0,0,0,0,1.64477330057155,0,0,0.127762427639595,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0.860454717640555,0,0,0,0.22910686854405,0,0,0,0,0,0,0.102662806856247,0,0.485710993059139,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.917458566809082,0,0.157771562193185,0.0679914901909147,0,0,0,0,0.432626562123789,0,0.218531143927391,0,0.713921808193872,0,1.01084389488329,0,0.454672189309436,1.07185652062471,0,0,0,0,0,0,0,0,0,0.435433495793923,0,0,0.358611026963382,0.665320713092027,0.0814032686109745,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:54925405..54925424,+ | |short_description=p@chr3:54925405..54925424,+ | ||
}} | }} |
Latest revision as of 22:41, 29 July 2015
Short description: | p@chr3:54925405..54925424, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:54925405..54925424, + |
Coexpression cluster: | C393_amniotic_Placental_Amniotic_clear_Basophils_pharyngeal_tonsil |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.42e-54 | 19 |
placental epithelial cell | 1.34e-27 | 3 |
chorionic membrane mesenchymal stem cell | 9.40e-27 | 3 |
amniotic epithelial cell | 1.10e-18 | 2 |
amnion mesenchymal stem cell | 8.57e-17 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.25e-74 | 14 |
membranous layer | 1.25e-74 | 14 |
chorion | 5.44e-45 | 7 |
extraembryonic structure | 7.26e-43 | 24 |
amnion | 9.76e-32 | 7 |
somatic layer of lateral plate mesoderm | 9.05e-28 | 8 |
egg chorion | 9.40e-27 | 3 |
placenta | 7.24e-21 | 4 |
allantois | 7.24e-21 | 4 |
larynx | 1.51e-15 | 9 |
organ component layer | 1.75e-14 | 66 |
parotid gland | 4.44e-10 | 1 |
cheek | 4.44e-10 | 1 |
parotid gland primordium | 4.44e-10 | 1 |
upper respiratory tract | 1.85e-07 | 19 |