FFCP PHASE1:Hg19::chr3:54925431..54925442,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:54925431..54925442,+ | |||
|coexpression_cluster_id=C393 | |coexpression_cluster_id=C393 | ||
|description=CAGE_peak_at_chr3:54925431..54925442,+ | |description=CAGE_peak_at_chr3:54925431..54925442,+ | ||
|id=chr3:54925431..54925442,+ | |id=chr3:54925431..54925442,+ | ||
|ontology_enrichment_celltype=CL:0000349!4.32e-14!3;CL:0002577!4.32e-14!3;CL:0002150!7.70e-13!3;CL:0000861!7.70e-13!3;CL:0000039!2.81e-09!7;CL:0000586!2.81e-09!7;CL:0002537!1.67e-08!5 | |ontology_enrichment_celltype=CL:0000349!4.32e-14!3;CL:0002577!4.32e-14!3;CL:0002150!7.70e-13!3;CL:0000861!7.70e-13!3;CL:0000039!2.81e-09!7;CL:0000586!2.81e-09!7;CL:0002537!1.67e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0002577;3.01e-66;3!CL:0000349;2.53e-56;19!CL:0002537;7.92e-19;5!CL:0002536;3.06e-12;2!CL:0002541;1.35e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.92e-66,3;CL:0000349,2.53e-56,19;CL:0002537,8.66e-19,5;CL:0002536,2.90e-12,2;CL:0002541,1.51e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!1.34e-29!14;UBERON:0000158!1.34e-29!14;UBERON:0003124!3.13e-22!7;UBERON:0001987!4.33e-18!4;UBERON:0004340!4.33e-18!4;UBERON:0000478!2.20e-16!24;UBERON:0001737!1.04e-15!9;UBERON:0000305!2.80e-10!7;UBERON:0001557!1.48e-09!19;UBERON:0004871!5.40e-09!8;UBERON:0004923!2.73e-08!57;UBERON:0000473!8.05e-08!8 | |ontology_enrichment_uberon=UBERON:0005631!1.34e-29!14;UBERON:0000158!1.34e-29!14;UBERON:0003124!3.13e-22!7;UBERON:0001987!4.33e-18!4;UBERON:0004340!4.33e-18!4;UBERON:0000478!2.20e-16!24;UBERON:0001737!1.04e-15!9;UBERON:0000305!2.80e-10!7;UBERON:0001557!1.48e-09!19;UBERON:0004871!5.40e-09!8;UBERON:0004923!2.73e-08!57;UBERON:0000473!8.05e-08!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;6.10e-50;4!UBERON:0000478;1.24e-44;24!UBERON:0005631;1.63e-35;10!UBERON:0000158;1.63e-35;10!UBERON:0000305;4.89e-29;7!UBERON:0003124;1.35e-08;3!UBERON:0000920;1.35e-08;3!UBERON:0000077;5.12e-08;27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.41e-76,14;UBERON:0000158,2.41e-76,14;UBERON:0003124,2.49e-50,7;UBERON:0001987,4.37e-50,4;UBERON:0004340,4.37e-50,4;UBERON:0000478,1.24e-44,24;UBERON:0000305,5.13e-29,7;UBERON:0004871,1.70e-25,8;UBERON:0004923,2.95e-16,66;UBERON:0000995,3.68e-10,21;UBERON:0005795,9.98e-10,22;UBERON:0003975,9.98e-10,22;UBERON:0004175,1.24e-08,25;UBERON:0000920,1.51e-08,3;UBERON:0000077,1.59e-07,29 | |||
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|short_description=p@chr3:54925431..54925442,+ | |short_description=p@chr3:54925431..54925442,+ | ||
}} | }} |
Latest revision as of 22:41, 29 July 2015
Short description: | p@chr3:54925431..54925442, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:54925431..54925442, + |
Coexpression cluster: | C393_amniotic_Placental_Amniotic_clear_Basophils_pharyngeal_tonsil |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.92e-66 | 3 |
extraembryonic cell | 2.53e-56 | 19 |
amnion mesenchymal stem cell | 8.66e-19 | 5 |
amniotic epithelial cell | 2.90e-12 | 2 |
chorionic membrane mesenchymal stem cell | 1.51e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.41e-76 | 14 |
membranous layer | 2.41e-76 | 14 |
chorion | 2.49e-50 | 7 |
placenta | 4.37e-50 | 4 |
allantois | 4.37e-50 | 4 |
extraembryonic structure | 1.24e-44 | 24 |
amnion | 5.13e-29 | 7 |
somatic layer of lateral plate mesoderm | 1.70e-25 | 8 |
organ component layer | 2.95e-16 | 66 |
uterus | 3.68e-10 | 21 |
embryonic uterus | 9.98e-10 | 22 |
internal female genitalia | 9.98e-10 | 22 |
internal genitalia | 1.24e-08 | 25 |
egg chorion | 1.51e-08 | 3 |
mixed endoderm/mesoderm-derived structure | 1.59e-07 | 29 |