FFCP PHASE1:Hg19::chr3:55518443..55518474,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:55518443..55518474,- | |||
|coexpression_cluster_id=C323 | |||
|description=CAGE_peak_at_chr3:55518443..55518474,- | |description=CAGE_peak_at_chr3:55518443..55518474,- | ||
|id=chr3:55518443..55518474,- | |id=chr3:55518443..55518474,- | ||
|ontology_enrichment_celltype=CL:0000133!1.43e-09!59;CL:0000349!1.96e-09!3;CL:0002577!1.96e-09!3;CL:0002537!3.16e-09!5;CL:0000346!5.23e-09!3;CL:1000428!5.23e-09!3;CL:0002603!7.68e-08!3;CL:0000221!2.92e-07!71;CL:0000197!4.96e-07!6;CL:0000098!4.96e-07!6;CL:0002167!4.96e-07!6;CL:0002559!8.03e-07!4;CL:0002536!8.62e-07!2 | |ontology_enrichment_celltype=CL:0000133!1.43e-09!59;CL:0000349!1.96e-09!3;CL:0002577!1.96e-09!3;CL:0002537!3.16e-09!5;CL:0000346!5.23e-09!3;CL:1000428!5.23e-09!3;CL:0002603!7.68e-08!3;CL:0000221!2.92e-07!71;CL:0000197!4.96e-07!6;CL:0000098!4.96e-07!6;CL:0002167!4.96e-07!6;CL:0002559!8.03e-07!4;CL:0002536!8.62e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.55e-49;19!CL:0002577;1.14e-36;3!CL:0002536;8.49e-25;2!CL:0002537;1.43e-21;5!CL:0000346;1.67e-16;3!CL:1000428;1.67e-16;3!CL:0002559;2.77e-10;5!CL:0000048;1.62e-07;58!CL:0002363;4.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.84e-49,19;CL:0002577,1.14e-36,3;CL:0002536,7.09e-25,2;CL:0002537,1.28e-21,5;CL:0000346,1.74e-16,3;CL:1000428,1.74e-16,3;CL:0002559,2.84e-10,5;CL:0002363,5.60e-07,2;CL:0000008,5.60e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008801;2.18e-13;1!CL:0000008;4.83e-07;2 | |||
|ontology_enrichment_disease=DOID:2394!5.48e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.29e-22!14;UBERON:0000158!7.29e-22!14;UBERON:0000305!3.73e-14!7;UBERON:0004871!2.87e-12!8;UBERON:0000478!1.37e-11!24;UBERON:0001987!3.78e-11!4;UBERON:0004340!3.78e-11!4;UBERON:0003124!1.31e-09!7;UBERON:0000412!5.23e-09!3;UBERON:0001992!5.23e-09!3;UBERON:0004923!3.57e-08!57;UBERON:0002073!8.03e-07!4;UBERON:0005086!8.03e-07!4 | |ontology_enrichment_uberon=UBERON:0005631!7.29e-22!14;UBERON:0000158!7.29e-22!14;UBERON:0000305!3.73e-14!7;UBERON:0004871!2.87e-12!8;UBERON:0000478!1.37e-11!24;UBERON:0001987!3.78e-11!4;UBERON:0004340!3.78e-11!4;UBERON:0003124!1.31e-09!7;UBERON:0000412!5.23e-09!3;UBERON:0001992!5.23e-09!3;UBERON:0004923!3.57e-08!57;UBERON:0002073!8.03e-07!4;UBERON:0005086!8.03e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;8.99e-42;7!UBERON:0005631;9.22e-42;10!UBERON:0000158;9.22e-42;10!UBERON:0000478;9.42e-39;24!UBERON:0001987;1.08e-27;4!UBERON:0000412;1.67e-16;3!UBERON:0001992;1.67e-16;3!UBERON:0001831;2.18e-13;1!UBERON:0001567;2.18e-13;1!UBERON:0002073;2.77e-10;5!UBERON:0001044;8.91e-09;6!UBERON:0003293;8.91e-09;6!UBERON:0003294;8.91e-09;6!UBERON:0010047;8.91e-09;6!UBERON:0003408;8.91e-09;6!UBERON:0000167;8.91e-09;6!UBERON:0004923;2.06e-08;55!UBERON:0001829;2.50e-07;2!UBERON:0004089;2.50e-07;2!UBERON:0003566;4.83e-07;2!UBERON:0001777;4.83e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.70e-67,14;UBERON:0000158,3.70e-67,14;UBERON:0000305,6.98e-42,7;UBERON:0000478,7.90e-39,24;UBERON:0004871,1.15e-36,8;UBERON:0001987,1.08e-27,4;UBERON:0004340,1.08e-27,4;UBERON:0003124,1.38e-27,7;UBERON:0004923,3.31e-20,66;UBERON:0000412,1.74e-16,3;UBERON:0001992,1.74e-16,3;UBERON:0001831,2.32e-13,1;UBERON:0001567,2.32e-13,1;UBERON:0008801,2.32e-13,1;UBERON:0002073,2.84e-10,5;UBERON:0005086,2.84e-10,5;UBERON:0001044,8.24e-09,6;UBERON:0003293,8.24e-09,6;UBERON:0003294,8.24e-09,6;UBERON:0010047,8.24e-09,6;UBERON:0000167,8.24e-09,6;UBERON:0001829,2.58e-07,2;UBERON:0004089,2.58e-07,2;UBERON:0003566,5.60e-07,2;UBERON:0001777,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,4.58726881473362,5.53910654279752,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0.554128230968366,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0.558350568994769,0,0,0,0,0.161646056818812,0,0.10075209822764,0.339121184620975,0,0,0,0,0,0.232387885739037,0,0,0,1.56449532329816,0.643240938192885,4.14404764057442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,1.59562869950922,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.535286966391485,0.473107245101804,0.585707074963566,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,5.75942385747893,8.32177197552485,5.44302527993425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.71623345421307,4.15750553165694,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,2.83952539545773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,2.04465626142506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0.449803112163605,0.155262956876259,0,0,1.04349012362347,0,0.380805212168795,0,0.363697318405119,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0,0,0,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48257766857182,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35535298446752,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,4.58726881473362,5.53910654279752,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0.50133791063589,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0,0,0,0,0,0.168336113954066,0,0.554128230968366,0,0,0,0,0.179389635688862,0.427114777637135,0,0,0,0,0.558350568994769,0,0,0,0,0.161646056818812,0,0.10075209822764,0.339121184620975,0,0,0,0,0,0.232387885739037,0,0,0,1.56449532329816,0.643240938192885,4.14404764057442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686271241194102,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0.469634776943287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,1.59562869950922,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.535286966391485,0.473107245101804,0.585707074963566,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,5.75942385747893,8.32177197552485,5.44302527993425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0,0,0,0,0,0,0,0.6970372701606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0.424216295861138,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.71623345421307,4.15750553165694,2.76444631889309,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,2.83952539545773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,2.04465626142506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0.449803112163605,0.155262956876259,0,0,1.04349012362347,0,0.380805212168795,0,0.363697318405119,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0,0,0,0,0,0.352675943690684,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.48257766857182,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35535298446752,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:55518443..55518474,- | |short_description=p@chr3:55518443..55518474,- | ||
}} | }} |
Latest revision as of 22:43, 29 July 2015
Short description: | p@chr3:55518443..55518474, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55518443..55518474, - |
Coexpression cluster: | C323_Placental_Amniotic_neuroblastoma_amniotic_chorionic_hairy_locus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.84e-49 | 19 |
placental epithelial cell | 1.14e-36 | 3 |
amniotic epithelial cell | 7.09e-25 | 2 |
amnion mesenchymal stem cell | 1.28e-21 | 5 |
hair follicle dermal papilla cell | 1.74e-16 | 3 |
stem cell of epidermis | 1.74e-16 | 3 |
hair follicle cell | 2.84e-10 | 5 |
keratocyte | 5.60e-07 | 2 |
migratory cranial neural crest cell | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.70e-67 | 14 |
membranous layer | 3.70e-67 | 14 |
amnion | 6.98e-42 | 7 |
extraembryonic structure | 7.90e-39 | 24 |
somatic layer of lateral plate mesoderm | 1.15e-36 | 8 |
placenta | 1.08e-27 | 4 |
allantois | 1.08e-27 | 4 |
chorion | 1.38e-27 | 7 |
organ component layer | 3.31e-20 | 66 |
dermal papilla | 1.74e-16 | 3 |
papillary layer of dermis | 1.74e-16 | 3 |
parotid gland | 2.32e-13 | 1 |
cheek | 2.32e-13 | 1 |
parotid gland primordium | 2.32e-13 | 1 |
hair follicle | 2.84e-10 | 5 |
hair follicle placode | 2.84e-10 | 5 |
saliva-secreting gland | 8.24e-09 | 6 |
gland of oral region | 8.24e-09 | 6 |
gland of foregut | 8.24e-09 | 6 |
oral gland | 8.24e-09 | 6 |
oral cavity | 8.24e-09 | 6 |
major salivary gland | 2.58e-07 | 2 |
midface | 2.58e-07 | 2 |
head connective tissue | 5.60e-07 | 2 |
substantia propria of cornea | 5.60e-07 | 2 |