FFCP PHASE1:Hg19::chr3:69811826..69811835,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=4286 | |EntrezGene=entrezgene:4286 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=7105 | |HGNC=HGNC:7105 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=C9J845 | |UniProt=uniprot:C9J845 | ||
|association_with_transcript=-39bp_to_ENST00000433517_5end | |association_with_transcript=-39bp_to_ENST00000433517_5end | ||
|cluster_id=chr3:69811826..69811835,+ | |||
|description=CAGE_peak_16_at_MITF_5end | |description=CAGE_peak_16_at_MITF_5end | ||
|id=chr3:69811826..69811835,+ | |id=chr3:69811826..69811835,+ | ||
Revision as of 23:22, 29 July 2015
| Short description: | p16@MITF |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_16_at_MITF_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -39bp_to_ENST00000433517_5end |
| EntrezGene: | 4286 |
| HGNC: | 7105 |
| UniProt: | C9J845 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p16@MITF |
|---|
0.0
0.5
1.0
1.5
2.0
2.5
3.0
3.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney cell | 4.29e-19 | 17 |
| kidney epithelial cell | 4.29e-19 | 17 |
| epithelial cell of nephron | 1.15e-12 | 15 |
| kidney tubule cell | 5.57e-09 | 10 |
| nephron tubule epithelial cell | 5.57e-09 | 10 |
| kidney cortical cell | 1.20e-07 | 12 |
| renal cortical epithelial cell | 1.20e-07 | 12 |
Showing 1 to 7 of 7 entries
| Ontology term | p-value | n |
|---|---|---|
| nephron epithelium | 1.15e-12 | 15 |
| renal tubule | 1.15e-12 | 15 |
| nephron tubule | 1.15e-12 | 15 |
| nephron | 1.15e-12 | 15 |
| uriniferous tubule | 1.15e-12 | 15 |
| nephrogenic mesenchyme | 1.15e-12 | 15 |
| kidney | 1.24e-12 | 26 |
| kidney mesenchyme | 1.24e-12 | 26 |
| upper urinary tract | 1.24e-12 | 26 |
| kidney rudiment | 1.24e-12 | 26 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| cell type benign neoplasm | 1.82e-27 | 3 |
| leiomyoma | 1.82e-27 | 3 |
| benign neoplasm | 7.00e-21 | 4 |
| clear cell adenocarcinoma | 4.09e-11 | 2 |
Showing 1 to 4 of 4 entries
