Personal tools

FFCP PHASE1:Hg19::chr4:74284006..74284034,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C5|description=CAGE_peak_at_chr4:74284006..74284034,-|id=chr4:74284006..74284034,-|ontology_enrichment_celltype=CL:0000181!2.35e-50!12;CL:0000417!2.35e-50!12;CL:0000668!2.35e-50!12;CL:0000414!2.35e-50!12;CL:0000412!2.35e-50!12;CL:0000182!2.35e-50!12;CL:0000223!4.32e-16!59|ontology_enrichment_celltype_v019=CL:0000182;2.47e-49;12|ontology_enrichment_celltype_v019_2=CL:0000182,2.58e-49,12;CL:0000223,1.34e-13,58|ontology_enrichment_development_v019=UBERON:0004161;2.34e-37;11!UBERON:0009497;1.19e-31;13!UBERON:0001041;8.31e-14;30!UBERON:0003104;2.44e-13;31!CL:0000223;3.49e-10;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!3.23e-52!19;UBERON:0006925!3.23e-52!19;UBERON:0008836!3.23e-52!19;UBERON:0008835!5.42e-45!22;UBERON:0003894!5.42e-45!22;UBERON:0009854!5.31e-43!23;UBERON:0007499!1.70e-39!25;UBERON:0009497!1.70e-39!25;UBERON:0000015!1.70e-39!25;UBERON:0002423!1.70e-39!25;UBERON:0006235!1.70e-39!25;UBERON:0004161!1.70e-39!25;UBERON:0005057!6.02e-38!26;UBERON:0009856!6.02e-38!26;UBERON:0002365!1.08e-31!31;UBERON:0002330!1.08e-31!31;UBERON:0002368!5.70e-28!35;UBERON:0000949!1.42e-26!45;UBERON:0003929!1.43e-26!54;UBERON:0002530!5.58e-20!59;UBERON:0005172!1.84e-17!55;UBERON:0005173!1.84e-17!55;UBERON:0005911!4.62e-17!82;UBERON:0002417!1.20e-15!61;UBERON:0000916!1.20e-15!61;UBERON:0004921!2.59e-12!129;UBERON:0004185!2.59e-12!129;UBERON:0001041!1.42e-11!98;UBERON:0005177!1.69e-10!107;UBERON:0000077!2.99e-10!130;UBERON:0001007!5.31e-10!155;UBERON:0001555!5.31e-10!155;UBERON:0007026!5.31e-10!155;UBERON:0000490!1.41e-09!138;UBERON:0004119!4.78e-09!169;UBERON:0000925!4.78e-09!169;UBERON:0006595!4.78e-09!169;UBERON:0000466!1.00e-08!126;UBERON:0009569!5.73e-08!113;UBERON:0002405!9.83e-08!115;UBERON:0003914!1.39e-07!118;UBERON:0005256!1.59e-07!143;UBERON:0002148!2.12e-07!2;UBERON:0009662!2.12e-07!2|ontology_enrichment_uberon_v019=UBERON:0002107;5.17e-55;19!UBERON:0006925;5.17e-55;19!UBERON:0002423;9.58e-42;25!UBERON:0002365;2.52e-32;31!UBERON:0002330;2.52e-32;31!UBERON:0002368;1.64e-28;33!UBERON:0000949;5.79e-25;43!UBERON:0005172;1.80e-12;52!UBERON:0005173;1.80e-12;52!UBERON:0002417;6.21e-11;58!UBERON:0000916;6.21e-11;58!UBERON:0002530;7.86e-11;57!UBERON:0001007;5.53e-10;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.17e-55,19;UBERON:0006925,5.17e-55,19;UBERON:0008836,5.17e-55,19;UBERON:0008835,1.78e-47,22;UBERON:0003894,1.78e-47,22;UBERON:0009854,2.12e-45,23;UBERON:0007499,9.58e-42,25;UBERON:0009497,9.58e-42,25;UBERON:0000015,9.58e-42,25;UBERON:0002423,9.58e-42,25;UBERON:0006235,9.58e-42,25;UBERON:0004161,9.58e-42,25;UBERON:0009856,3.97e-40,26;UBERON:0002365,1.33e-33,31;UBERON:0002330,1.33e-33,31;UBERON:0002368,1.01e-29,35;UBERON:0000949,4.99e-29,45;UBERON:0003929,4.10e-24,54;UBERON:0005172,4.10e-19,54;UBERON:0005173,4.10e-19,54;UBERON:0002530,1.88e-17,59;UBERON:0002417,3.73e-17,60;UBERON:0000916,3.73e-17,60;UBERON:0005911,1.13e-15,82;UBERON:0005177,1.37e-12,101;UBERON:0001041,1.16e-11,87;UBERON:0004921,1.40e-10,118;UBERON:0009569,6.34e-09,112;UBERON:0003914,1.63e-08,117;UBERON:0001007,1.76e-08,145;UBERON:0001555,1.76e-08,145;UBERON:0007026,1.76e-08,145;UBERON:0000490,2.36e-08,148;UBERON:0005256,3.86e-08,122;UBERON:0004119,1.30e-07,160;UBERON:0000925,1.30e-07,160;UBERON:0006595,1.30e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,83.6583229824084,55.0383241339471,19.4960669204863,0,2.45976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6572119002828,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9125253973019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3993800645535,14.9172703669911,13.0762875077119,0.885847333632739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1466704469932,13.2506888912221,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:74284006..74284034,-}}
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=NA
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript
|HGNC=NA
|TSSclassifier=strong
|UniProt=NA
|association_with_transcript=NA
|cluster_id=chr4:74284006..74284034,-
|coexpression_cluster_id=C5
|description=CAGE_peak_at_chr4:74284006..74284034,-
|id=chr4:74284006..74284034,-
|ontology_enrichment_celltype=CL:0000181!2.35e-50!12;CL:0000417!2.35e-50!12;CL:0000668!2.35e-50!12;CL:0000414!2.35e-50!12;CL:0000412!2.35e-50!12;CL:0000182!2.35e-50!12;CL:0000223!4.32e-16!59
|ontology_enrichment_celltype_v019=CL:0000182;2.47e-49;12
|ontology_enrichment_celltype_v019_2=CL:0000182,2.58e-49,12;CL:0000223,1.34e-13,58
|ontology_enrichment_development_v019=UBERON:0004161;2.34e-37;11!UBERON:0009497;1.19e-31;13!UBERON:0001041;8.31e-14;30!UBERON:0003104;2.44e-13;31!CL:0000223;3.49e-10;58
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0002107!3.23e-52!19;UBERON:0006925!3.23e-52!19;UBERON:0008836!3.23e-52!19;UBERON:0008835!5.42e-45!22;UBERON:0003894!5.42e-45!22;UBERON:0009854!5.31e-43!23;UBERON:0007499!1.70e-39!25;UBERON:0009497!1.70e-39!25;UBERON:0000015!1.70e-39!25;UBERON:0002423!1.70e-39!25;UBERON:0006235!1.70e-39!25;UBERON:0004161!1.70e-39!25;UBERON:0005057!6.02e-38!26;UBERON:0009856!6.02e-38!26;UBERON:0002365!1.08e-31!31;UBERON:0002330!1.08e-31!31;UBERON:0002368!5.70e-28!35;UBERON:0000949!1.42e-26!45;UBERON:0003929!1.43e-26!54;UBERON:0002530!5.58e-20!59;UBERON:0005172!1.84e-17!55;UBERON:0005173!1.84e-17!55;UBERON:0005911!4.62e-17!82;UBERON:0002417!1.20e-15!61;UBERON:0000916!1.20e-15!61;UBERON:0004921!2.59e-12!129;UBERON:0004185!2.59e-12!129;UBERON:0001041!1.42e-11!98;UBERON:0005177!1.69e-10!107;UBERON:0000077!2.99e-10!130;UBERON:0001007!5.31e-10!155;UBERON:0001555!5.31e-10!155;UBERON:0007026!5.31e-10!155;UBERON:0000490!1.41e-09!138;UBERON:0004119!4.78e-09!169;UBERON:0000925!4.78e-09!169;UBERON:0006595!4.78e-09!169;UBERON:0000466!1.00e-08!126;UBERON:0009569!5.73e-08!113;UBERON:0002405!9.83e-08!115;UBERON:0003914!1.39e-07!118;UBERON:0005256!1.59e-07!143;UBERON:0002148!2.12e-07!2;UBERON:0009662!2.12e-07!2
|ontology_enrichment_uberon_v019=UBERON:0002107;5.17e-55;19!UBERON:0006925;5.17e-55;19!UBERON:0002423;9.58e-42;25!UBERON:0002365;2.52e-32;31!UBERON:0002330;2.52e-32;31!UBERON:0002368;1.64e-28;33!UBERON:0000949;5.79e-25;43!UBERON:0005172;1.80e-12;52!UBERON:0005173;1.80e-12;52!UBERON:0002417;6.21e-11;58!UBERON:0000916;6.21e-11;58!UBERON:0002530;7.86e-11;57!UBERON:0001007;5.53e-10;81
|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.17e-55,19;UBERON:0006925,5.17e-55,19;UBERON:0008836,5.17e-55,19;UBERON:0008835,1.78e-47,22;UBERON:0003894,1.78e-47,22;UBERON:0009854,2.12e-45,23;UBERON:0007499,9.58e-42,25;UBERON:0009497,9.58e-42,25;UBERON:0000015,9.58e-42,25;UBERON:0002423,9.58e-42,25;UBERON:0006235,9.58e-42,25;UBERON:0004161,9.58e-42,25;UBERON:0009856,3.97e-40,26;UBERON:0002365,1.33e-33,31;UBERON:0002330,1.33e-33,31;UBERON:0002368,1.01e-29,35;UBERON:0000949,4.99e-29,45;UBERON:0003929,4.10e-24,54;UBERON:0005172,4.10e-19,54;UBERON:0005173,4.10e-19,54;UBERON:0002530,1.88e-17,59;UBERON:0002417,3.73e-17,60;UBERON:0000916,3.73e-17,60;UBERON:0005911,1.13e-15,82;UBERON:0005177,1.37e-12,101;UBERON:0001041,1.16e-11,87;UBERON:0004921,1.40e-10,118;UBERON:0009569,6.34e-09,112;UBERON:0003914,1.63e-08,117;UBERON:0001007,1.76e-08,145;UBERON:0001555,1.76e-08,145;UBERON:0007026,1.76e-08,145;UBERON:0000490,2.36e-08,148;UBERON:0005256,3.86e-08,122;UBERON:0004119,1.30e-07,160;UBERON:0000925,1.30e-07,160;UBERON:0006595,1.30e-07,160
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,83.6583229824084,55.0383241339471,19.4960669204863,0,2.45976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.6572119002828,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9125253973019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3993800645535,14.9172703669911,13.0762875077119,0.885847333632739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.1466704469932,13.2506888912221,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|short_description=p@chr4:74284006..74284034,-
}}

Latest revision as of 06:36, 30 July 2015

Short description:p@chr4:74284006..74284034, -
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_at_chr4:74284006..74284034, -
Coexpression cluster:C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas
Association with transcript: NA
EntrezGene:NA
HGNC: NA
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
20
40
60
80
100




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Hg19::chr4:74284006..74284034,-&oldid=3582013"