FFCP PHASE1:Hg19::chr6:139592286..139592298,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:139592286..139592298,- | |||
|coexpression_cluster_id=C1183 | |||
|description=CAGE_peak_at_chr6:139592286..139592298,- | |description=CAGE_peak_at_chr6:139592286..139592298,- | ||
|id=chr6:139592286..139592298,- | |id=chr6:139592286..139592298,- | ||
|ontology_enrichment_celltype=CL:0000945!2.19e-36!24;CL:0000826!2.19e-36!24;CL:0000236!4.76e-22!14;CL:0000542!5.83e-18!53;CL:0000051!5.83e-18!53;CL:0000838!1.52e-15!52;CL:0002087!1.74e-13!119;CL:0000738!2.39e-12!140;CL:0002031!3.14e-11!124;CL:0002032!6.64e-10!165;CL:0000837!6.64e-10!165;CL:0000037!2.39e-09!172;CL:0000566!2.39e-09!172;CL:0000988!1.26e-08!182 | |ontology_enrichment_celltype=CL:0000945!2.19e-36!24;CL:0000826!2.19e-36!24;CL:0000236!4.76e-22!14;CL:0000542!5.83e-18!53;CL:0000051!5.83e-18!53;CL:0000838!1.52e-15!52;CL:0002087!1.74e-13!119;CL:0000738!2.39e-12!140;CL:0002031!3.14e-11!124;CL:0002032!6.64e-10!165;CL:0000837!6.64e-10!165;CL:0000037!2.39e-09!172;CL:0000566!2.39e-09!172;CL:0000988!1.26e-08!182 | ||
|ontology_enrichment_celltype_v019=CL:0000945;6.78e-27;24!CL:0000236;3.43e-13;13!CL:0000542;6.11e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.78e-27,24;CL:0000826,6.78e-27,24;CL:0000838,7.71e-13,52;CL:0000542,1.31e-12,53;CL:0000051,1.31e-12,53;CL:0000236,2.37e-12,14 | |||
|ontology_enrichment_development_v019=CL:0000051;6.11e-08;53!UBERON:0004872;5.08e-07;7 | |||
|ontology_enrichment_disease=DOID:0060058!1.28e-10!10;DOID:630!7.26e-08!1;DOID:0050177!7.26e-08!1;DOID:0050427!7.26e-08!1;DOID:12603!1.01e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.05e-36;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.44e-36,10;DOID:2531,8.60e-08,51;DOID:0060083,8.60e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.84e-14!7;UBERON:0002106!1.13e-09!3;UBERON:0004854!1.13e-09!3;UBERON:0009034!1.13e-09!3;UBERON:0002095!1.13e-09!3;UBERON:0004782!1.13e-09!3;UBERON:0003281!1.13e-09!3;UBERON:0009664!1.13e-09!3;UBERON:0002296!1.13e-09!3;UBERON:0005602!1.13e-09!3;UBERON:0001179!1.13e-09!3;UBERON:0006293!1.13e-09!3;UBERON:0005418!6.80e-08!1;UBERON:0001389!6.80e-08!1;UBERON:0000026!6.80e-08!1;UBERON:0008784!6.80e-08!1;UBERON:0006058!6.80e-08!1;UBERON:0003663!6.80e-08!1;UBERON:0001383!6.80e-08!1;UBERON:0004256!6.80e-08!1;UBERON:0002529!6.80e-08!1;UBERON:0004708!6.80e-08!1;UBERON:0002101!6.80e-08!1;UBERON:0004709!6.80e-08!1;UBERON:0003661!6.80e-08!1;UBERON:0002471!6.80e-08!1;UBERON:0004357!6.80e-08!1;UBERON:0009872!6.80e-08!1;UBERON:0004347!6.80e-08!1;UBERON:0005420!6.80e-08!1;UBERON:0005732!6.80e-08!1;UBERON:0006057!6.80e-08!1;UBERON:0000978!6.80e-08!1;UBERON:0002103!6.80e-08!1;UBERON:0001665!6.80e-08!1;UBERON:0003823!6.80e-08!1;UBERON:0000154!6.80e-08!1;UBERON:0005733!6.80e-08!1;UBERON:0005730!6.80e-08!1;UBERON:0000029!1.07e-07!1;UBERON:0002372!1.30e-07!1;UBERON:0001961!1.30e-07!1;UBERON:0001744!1.30e-07!1;UBERON:0001735!1.30e-07!1;UBERON:0001154!1.69e-07!1;UBERON:0001153!1.69e-07!1;UBERON:0002370!7.29e-07!4;UBERON:0005058!7.29e-07!4;UBERON:0009113!7.29e-07!4;UBERON:0003295!7.29e-07!4;UBERON:0005562!7.29e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.22e-14;3!UBERON:0004177;2.53e-09;5!UBERON:0005057;2.53e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.22e-14,3;UBERON:0004854,1.22e-14,3;UBERON:0009034,1.22e-14,3;UBERON:0002095,1.22e-14,3;UBERON:0004782,1.22e-14,3;UBERON:0003281,1.22e-14,3;UBERON:0009664,1.22e-14,3;UBERON:0002296,1.22e-14,3;UBERON:0005602,1.22e-14,3;UBERON:0001179,1.22e-14,3;UBERON:0006293,1.22e-14,3;UBERON:0004177,5.08e-07,7;UBERON:0005057,5.08e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,0,0,0,0,0,0,0.154934401160603,1.27952309238679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0.889509253863555,1.28019066769952,0.800791974072025,0.574752439954483,1.98313461835459,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,1.46151118057075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469919589899268,0,2.99823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,0,0,0,0,0,0,0.154934401160603,1.27952309238679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0.889509253863555,1.28019066769952,0.800791974072025,0.574752439954483,1.98313461835459,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496166021811951,0,1.46151118057075,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.647428837187895,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469919589899268,0,2.99823467774787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.336760265072938,0,0,0,0,0,0,0,0,0,0,0,0.641136984606466 | ||
|short_description=p@chr6:139592286..139592298,- | |short_description=p@chr6:139592286..139592298,- | ||
}} | }} |
Latest revision as of 20:13, 30 July 2015
Short description: | p@chr6:139592286..139592298, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:139592286..139592298, - |
Coexpression cluster: | C1183_splenic_CD19_Burkitt_acute_xeroderma_B_appendix |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.78e-27 | 24 |
pro-B cell | 6.78e-27 | 24 |
lymphoid lineage restricted progenitor cell | 7.71e-13 | 52 |
lymphocyte | 1.31e-12 | 53 |
common lymphoid progenitor | 1.31e-12 | 53 |
B cell | 2.37e-12 | 14 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.22e-14 | 3 |
gastrointestinal system mesentery | 1.22e-14 | 3 |
stomach region | 1.22e-14 | 3 |
mesentery | 1.22e-14 | 3 |
gastrointestinal system serosa | 1.22e-14 | 3 |
mesentery of stomach | 1.22e-14 | 3 |
gut mesentery | 1.22e-14 | 3 |
dorsal mesentery | 1.22e-14 | 3 |
dorsal mesogastrium | 1.22e-14 | 3 |
peritoneal cavity | 1.22e-14 | 3 |
spleen primordium | 1.22e-14 | 3 |
hemopoietic organ | 5.08e-07 | 7 |
immune organ | 5.08e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.44e-36 | 10 |
hematologic cancer | 8.60e-08 | 51 |
immune system cancer | 8.60e-08 | 51 |