FFCP PHASE1:Hg19::chr7:72699322..72699335,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:72699322..72699335,-
|short_description=p1@uc003txt.2
|description=CAGE_peak_1_at_uc003txt.2_5end
|association_with_transcript=-437bp_to_uc003txt.2_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-437bp_to_uc003txt.2_5end | |||
|cluster_id=chr7:72699322..72699335,- | |||
|coexpression_cluster_id=C2531 | |||
|description=CAGE_peak_1_at_uc003txt.2_5end | |||
|id=chr7:72699322..72699335,- | |||
|ontology_enrichment_celltype=CL:0000039!1.20e-20!7;CL:0000586!1.20e-20!7;CL:0002251!2.93e-10!21;CL:0000066!4.17e-08!254;CL:0000076!5.72e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.86e-32;7!CL:0000586;1.86e-32;7!CL:0002535;2.15e-08;2!CL:0002251;5.28e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.58e-33,7;CL:0000586,7.58e-33,7;CL:0002535,1.73e-08,2;CL:0002251,5.92e-07,20;CL:0000066,8.73e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0009117;7.40e-23;10!UBERON:0005564;7.40e-23;10!UBERON:0008814;1.34e-08;2!UBERON:0010056;1.34e-08;2 | |||
|ontology_enrichment_disease=DOID:1749!1.12e-38!14;DOID:305!6.49e-21!106;DOID:0050687!8.59e-17!143;DOID:162!1.34e-11!235;DOID:14566!2.74e-11!239;DOID:3151!1.98e-10!1;DOID:3149!1.98e-10!1;DOID:178!4.06e-10!1;DOID:326!4.06e-10!1;DOID:3978!4.06e-10!1;DOID:3394!4.06e-10!1;DOID:5844!4.06e-10!1;DOID:4362!7.01e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.09e-16;14!DOID:3151;6.92e-16;1!DOID:3149;6.92e-16;1!DOID:178;1.78e-15;1!DOID:326;1.78e-15;1!DOID:3978;1.78e-15;1!DOID:3394;1.78e-15;1!DOID:5844;1.78e-15;1!DOID:3095;1.43e-10;22!DOID:2994;1.43e-10;22!DOID:3451;1.34e-08;2!DOID:4159;1.34e-08;2!DOID:0060122;1.34e-08;2!DOID:4074;2.15e-08;2!DOID:114;2.15e-08;2!DOID:4905;2.15e-08;2!DOID:3498;2.15e-08;2!DOID:305;1.44e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.06e-16,14;DOID:3151,7.46e-16,1;DOID:3149,7.46e-16,1;DOID:178,2.38e-15,1;DOID:326,2.38e-15,1;DOID:3978,2.38e-15,1;DOID:3394,2.38e-15,1;DOID:5844,2.38e-15,1;DOID:305,4.60e-15,106;DOID:0050687,4.64e-13,143;DOID:3095,1.08e-10,22;DOID:2994,1.08e-10,22;DOID:162,7.39e-09,235;DOID:14566,1.21e-08,239;DOID:3451,1.39e-08,2;DOID:4159,1.39e-08,2;DOID:0060122,1.39e-08,2;DOID:114,2.48e-08,2;DOID:4074,2.87e-08,2;DOID:4905,2.87e-08,2;DOID:3498,2.87e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!3.31e-20!4;UBERON:0004785!3.31e-20!4;UBERON:0000473!4.24e-18!8;UBERON:0003729!2.73e-16!5;UBERON:0003135!3.18e-13!11;UBERON:0000997!4.44e-10!1;UBERON:0005056!4.44e-10!1;UBERON:0004176!5.64e-10!22;UBERON:0000974!2.06e-08!10;UBERON:0003133!2.95e-08!48;UBERON:0000344!4.36e-07!12;UBERON:0000991!5.42e-07!21;UBERON:0009196!5.42e-07!21;UBERON:0009117!5.42e-07!21;UBERON:0005564!5.42e-07!21;UBERON:0000166!8.96e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;1.85e-28;8!UBERON:0003135;8.13e-21;11!UBERON:0000997;1.78e-15;1!UBERON:0005056;1.78e-15;1!UBERON:0004176;1.78e-15;1!UBERON:0000991;4.62e-11;21!UBERON:0003101;1.43e-10;22!UBERON:0000079;1.43e-10;22!UBERON:0003133;5.56e-09;44!UBERON:0006562;2.15e-08;2!UBERON:0006955;2.15e-08;2!UBERON:0004801;2.15e-08;2!UBERON:0002323;6.98e-08;45!UBERON:0004458;7.03e-07;48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.44e-29,8;UBERON:0003135,4.61e-21,11;UBERON:0004176,3.67e-16,22;UBERON:0000997,2.75e-15,1;UBERON:0005056,2.75e-15,1;UBERON:0000991,3.45e-11,21;UBERON:0009196,3.45e-11,21;UBERON:0009117,3.45e-11,21;UBERON:0005564,3.45e-11,21;UBERON:0003101,1.08e-10,22;UBERON:0000079,1.08e-10,22;UBERON:0003133,2.04e-10,48;UBERON:0004458,3.54e-10,49;UBERON:0006955,1.73e-08,2;UBERON:0004801,1.73e-08,2;UBERON:0005156,2.03e-08,59;UBERON:0000990,2.03e-08,59;UBERON:0002323,1.03e-07,46 | |||
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|short_description=p1@uc003txt.2 | |||
}} | }} |
Latest revision as of 11:26, 31 July 2015
Short description: | p1@uc003txt.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003txt.2_5end |
Coexpression cluster: | C2531_bronchial_chorionic_oral_keratoacanthoma_squamous_testicular_large |
Association with transcript: | -437bp_to_uc003txt.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.58e-33 | 7 |
germ cell | 7.58e-33 | 7 |
epithelial cell of cervix | 1.73e-08 | 2 |
epithelial cell of alimentary canal | 5.92e-07 | 20 |
epithelial cell | 8.73e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
testis | 8.44e-29 | 8 |
male reproductive organ | 4.61e-21 | 11 |
external genitalia | 3.67e-16 | 22 |
mammalian vulva | 2.75e-15 | 1 |
external female genitalia | 2.75e-15 | 1 |
gonad | 3.45e-11 | 21 |
indifferent external genitalia | 3.45e-11 | 21 |
indifferent gonad | 3.45e-11 | 21 |
gonad primordium | 3.45e-11 | 21 |
male organism | 1.08e-10 | 22 |
male reproductive system | 1.08e-10 | 22 |
reproductive organ | 2.04e-10 | 48 |
body cavity or lining | 3.54e-10 | 49 |
uterine epithelium | 1.73e-08 | 2 |
cervix epithelium | 1.73e-08 | 2 |
reproductive structure | 2.03e-08 | 59 |
reproductive system | 2.03e-08 | 59 |
body cavity | 1.03e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.06e-16 | 14 |
skin squamous cell carcinoma | 7.46e-16 | 1 |
keratoacanthoma | 7.46e-16 | 1 |
vascular disease | 2.38e-15 | 1 |
ischemia | 2.38e-15 | 1 |
extrinsic cardiomyopathy | 2.38e-15 | 1 |
myocardial ischemia | 2.38e-15 | 1 |
myocardial infarction | 2.38e-15 | 1 |
carcinoma | 4.60e-15 | 106 |
cell type cancer | 4.64e-13 | 143 |
germ cell and embryonal cancer | 1.08e-10 | 22 |
germ cell cancer | 1.08e-10 | 22 |
cancer | 7.39e-09 | 235 |
disease of cellular proliferation | 1.21e-08 | 239 |
skin carcinoma | 1.39e-08 | 2 |
skin cancer | 1.39e-08 | 2 |
integumentary system cancer | 1.39e-08 | 2 |
heart disease | 2.48e-08 | 2 |
pancreas adenocarcinoma | 2.87e-08 | 2 |
pancreatic carcinoma | 2.87e-08 | 2 |
pancreatic ductal adenocarcinoma | 2.87e-08 | 2 |