FFCP PHASE1:Hg19::chrX:52112158..52112165,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728242,9502 | |EntrezGene=728242,9502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30680,4112 | |HGNC=30680,4112 | ||
|TSSclassifier=strong | |||
|UniProt=Q96GT9 | |UniProt=Q96GT9 | ||
|association_with_transcript=-7bp_to_ENST00000286049_5end | |association_with_transcript=-7bp_to_ENST00000286049_5end | ||
|cluster_id=chrX:52112158..52112165,+ | |||
|coexpression_cluster_id=C1004 | |||
|description=CAGE_peak_1_at_XAGE2B_5end,CAGE_peak_1_at_XAGE2_5end | |description=CAGE_peak_1_at_XAGE2B_5end,CAGE_peak_1_at_XAGE2_5end | ||
|id=chrX:52112158..52112165,+ | |id=chrX:52112158..52112165,+ | ||
|ontology_enrichment_celltype=CL:0002541!5.91e-16!3;CL:0000349!3.09e-15!3;CL:0002577!3.09e-15!3;CL:0000039!2.37e-11!7;CL:0000586!2.37e-11!7;CL:0002536!1.89e-10!2;CL:0002537!1.23e-09!5 | |ontology_enrichment_celltype=CL:0002541!5.91e-16!3;CL:0000349!3.09e-15!3;CL:0002577!3.09e-15!3;CL:0000039!2.37e-11!7;CL:0000586!2.37e-11!7;CL:0002536!1.89e-10!2;CL:0002537!1.23e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.57e-47;19!CL:0002541;1.02e-24;3!CL:0002577;1.31e-23;3!CL:0002536;7.53e-16;2!CL:0002537;6.91e-15;5!CL:0000039;1.16e-10;7!CL:0000586;1.16e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.68e-47,19;CL:0002541,1.02e-24,3;CL:0002577,1.47e-23,3;CL:0002536,7.54e-16,2;CL:0002537,6.91e-15,5;CL:0000039,1.22e-10,7;CL:0000586,1.22e-10,7 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.82e-09;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;2.04e-09;1!DOID:10165;2.04e-09;1!DOID:1798;2.04e-09;1!DOID:3112;8.82e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,2.04e-09,1;DOID:10165,2.04e-09,1;DOID:1798,2.04e-09,1;DOID:3112,1.07e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.30e-48!14;UBERON:0000158!2.30e-48!14;UBERON:0003124!4.65e-34!7;UBERON:0000478!3.96e-27!24;UBERON:0001987!6.94e-20!4;UBERON:0004340!6.94e-20!4;UBERON:0000305!2.13e-17!7;UBERON:0000476!5.91e-16!3;UBERON:0000920!5.91e-16!3;UBERON:0004871!3.43e-15!8;UBERON:0004923!1.25e-13!57;UBERON:0000995!1.08e-07!21;UBERON:0005795!2.59e-07!22;UBERON:0003975!2.59e-07!22 | |ontology_enrichment_uberon=UBERON:0005631!2.30e-48!14;UBERON:0000158!2.30e-48!14;UBERON:0003124!4.65e-34!7;UBERON:0000478!3.96e-27!24;UBERON:0001987!6.94e-20!4;UBERON:0004340!6.94e-20!4;UBERON:0000305!2.13e-17!7;UBERON:0000476!5.91e-16!3;UBERON:0000920!5.91e-16!3;UBERON:0004871!3.43e-15!8;UBERON:0004923!1.25e-13!57;UBERON:0000995!1.08e-07!21;UBERON:0005795!2.59e-07!22;UBERON:0003975!2.59e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.38e-49;10!UBERON:0000158;6.38e-49;10!UBERON:0000478;1.73e-44;24!UBERON:0001987;4.13e-31;4!UBERON:0000305;1.89e-27;7!UBERON:0003124;1.02e-24;3!UBERON:0000920;1.02e-24;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.26e-77,14;UBERON:0000158,1.26e-77,14;UBERON:0003124,5.64e-54,7;UBERON:0000478,1.84e-44,24;UBERON:0001987,4.64e-31,4;UBERON:0004340,4.64e-31,4;UBERON:0000305,1.89e-27,7;UBERON:0000920,1.02e-24,3;UBERON:0004871,5.15e-24,8;UBERON:0004923,7.63e-15,66;UBERON:0000995,5.21e-09,21;UBERON:0005795,1.37e-08,22;UBERON:0003975,1.37e-08,22;UBERON:0004175,1.55e-07,25 | |||
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|short_description=p1@XAGE2B,p1@XAGE2 | |short_description=p1@XAGE2B,p1@XAGE2 | ||
}} | }} |
Latest revision as of 23:18, 15 September 2015
Short description: | p1@XAGE2B, p1@XAGE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_XAGE2B_5end, CAGE_peak_1_at_XAGE2_5end |
Coexpression cluster: | C1004_chorionic_pancreatic_choriocarcinoma_amniotic_placenta_colon_Placental |
Association with transcript: | -7bp_to_ENST00000286049_5end |
EntrezGene: | 728242,9502 |
HGNC: | 4112&submit=Submit 30680, 4112 |
UniProt: | Q96GT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.68e-47 | 19 |
chorionic membrane mesenchymal stem cell | 1.02e-24 | 3 |
placental epithelial cell | 1.47e-23 | 3 |
amniotic epithelial cell | 7.54e-16 | 2 |
amnion mesenchymal stem cell | 6.91e-15 | 5 |
germ line cell | 1.22e-10 | 7 |
germ cell | 1.22e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.26e-77 | 14 |
membranous layer | 1.26e-77 | 14 |
chorion | 5.64e-54 | 7 |
extraembryonic structure | 1.84e-44 | 24 |
placenta | 4.64e-31 | 4 |
allantois | 4.64e-31 | 4 |
amnion | 1.89e-27 | 7 |
egg chorion | 1.02e-24 | 3 |
somatic layer of lateral plate mesoderm | 5.15e-24 | 8 |
organ component layer | 7.63e-15 | 66 |
uterus | 5.21e-09 | 21 |
embryonic uterus | 1.37e-08 | 22 |
internal female genitalia | 1.37e-08 | 22 |
internal genitalia | 1.55e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 2.04e-09 | 1 |
endocrine pancreas cancer | 2.04e-09 | 1 |
pancreatic endocrine carcinoma | 2.04e-09 | 1 |
papillary adenocarcinoma | 1.07e-08 | 1 |