FFCP PHASE1:Hg19::chr12:110868182..110868192,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=13323 | |HGNC=13323 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-94bp_to_ENST00000549577_5end | |association_with_transcript=-94bp_to_ENST00000549577_5end | ||
|cluster_id=chr12:110868182..110868192,- | |||
|description=CAGE_peak_1_at_HMGA1P3_5end | |description=CAGE_peak_1_at_HMGA1P3_5end | ||
|id=chr12:110868182..110868192,- | |id=chr12:110868182..110868192,- | ||
|ontology_enrichment_celltype=CL:0000548!9.31e-22!679;CL:0000004!9.31e-22!679;CL:0000255!9.31e-22!679;CL:0000012!9.96e-22!682;CL:0000066!3.88e-16!254;CL:0000003!4.36e-15!722;CL:0002321!7.15e-14!248;CL:0000144!1.38e-13!625;CL:0000220!3.76e-13!246;CL:0002371!3.25e-10!591;CL:0000063!7.56e-08!578;CL:0000222!9.58e-08!119;CL:1000507!6.19e-07!12;CL:1000494!6.19e-07!12 | |ontology_enrichment_celltype=CL:0000548!9.31e-22!679;CL:0000004!9.31e-22!679;CL:0000255!9.31e-22!679;CL:0000012!9.96e-22!682;CL:0000066!3.88e-16!254;CL:0000003!4.36e-15!722;CL:0002321!7.15e-14!248;CL:0000144!1.38e-13!625;CL:0000220!3.76e-13!246;CL:0002371!3.25e-10!591;CL:0000063!7.56e-08!578;CL:0000222!9.58e-08!119;CL:1000507!6.19e-07!12;CL:1000494!6.19e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:1000449;4.82e-12;15!CL:1000497;2.36e-10;17!CL:0002518;2.36e-10;17!CL:1000507;4.77e-09;10!CL:1000494;4.77e-09;10!CL:0002681;1.29e-07;12!CL:0002584;1.29e-07;12!CL:0002202;2.67e-07;9!CL:0002632;2.67e-07;9!CL:0002322;7.24e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,5.91e-13,15;CL:1000497,3.86e-11,17;CL:0002518,3.86e-11,17;CL:1000507,6.38e-10,10;CL:1000494,6.38e-10,10;CL:0002321,2.16e-08,250;CL:0002681,3.45e-08,12;CL:0002584,3.45e-08,12;CL:0002202,5.49e-07,9;CL:0002632,5.49e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.95e-08!239;DOID:162!9.15e-08!235;DOID:305!1.93e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!3.06e-08!143;UBERON:0003104!6.33e-08!238;UBERON:0009142!6.33e-08!238;UBERON:0003914!3.40e-07!118;UBERON:0002100!3.98e-07!216;UBERON:0000490!5.42e-07!138;UBERON:0000464!6.04e-07!104;UBERON:0009773!6.19e-07!12;UBERON:0001231!6.19e-07!12;UBERON:0004810!6.19e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.82e-12;15!UBERON:0004819;4.82e-12;15!UBERON:0001285;4.82e-12;15!UBERON:0007684;4.82e-12;15!UBERON:0004211;4.77e-09;10!UBERON:0009773;4.77e-09;10!UBERON:0001231;4.77e-09;10!UBERON:0004810;4.77e-09;10!UBERON:0000991;1.12e-07;21!UBERON:0001225;1.29e-07;12!UBERON:0008987;1.29e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.91e-13,15;UBERON:0009773,5.91e-13,15;UBERON:0001231,5.91e-13,15;UBERON:0001285,5.91e-13,15;UBERON:0007684,5.91e-13,15;UBERON:0004208,5.91e-13,15;UBERON:0006555,5.45e-12,16;UBERON:0004819,5.45e-12,16;UBERON:0004810,6.38e-10,10;UBERON:0001225,3.45e-08,12;UBERON:0008987,3.45e-08,12;UBERON:0003914,5.70e-08,117;UBERON:0000991,1.07e-07,21;UBERON:0009196,1.07e-07,21;UBERON:0009117,1.07e-07,21;UBERON:0005564,1.07e-07,21;UBERON:0004176,3.00e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.72013755551056,3.48900583986214,0.436882744260345,0.263766978228454,1.11389717664042,0,0,1.20538905604795,0,0.975865597581014,0.861847406537515,0.612002073732759,0,0,0.958120975510189,0.125542639594803,0.534893840235659,0.738905305049512,0.865818594450472,0,0,0,0.919421224478927,0,1.10926203050036,0.387336002901508,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0.145398238779565,0.377875943688809,0,0,1.23350366406548,0,0.28769239232215,0.256160706529101,0.236482229888585,0,0,0,0,0.545812300115692,0,0,0.320929027076094,0,0,0.199463657621632,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,0,0,0,0,0,0.472674085820339,0.886917589850256,0.175669571386252,0,0.364295288292542,0,0,0,0,0,0,0,1.19257444420023,0.860234595106124,0.347140501607594,1.13061588384802,0,2.20094433552054,0.417989933073621,0.258416759169329,0,0.33472061276467,0,0,0.488124115096339,0.735326160691737,0,1.16089646769304,0.673588117878509,1.68917220724983,0,1.89853131913626,0.549605231791222,0,0,1.74437620857014,0,0.12663051166458,0,0,1.77334191099179,0,2.1349799145941,0.24666754841716,0,0.134710672069688,0.490385709340376,0,0,1.17160715916898,0.936480230490962,0.570471821544449,0.896692083310806,0.822041490506354,0.647491777472526,0.421352420106746,0.408308342509787,0.491337269247072,0.309977343527296,0,0,2.73048408581408,0.718618141816238,0.336672227908132,1.25118519871964,0.831192346452549,0.438977620880838,0.612975591598039,0.150238058906597,0.226864366320042,0.179389635688862,0,0.423863802319124,0,0.206105058476878,0,0,0,0,0,0.0920498986422993,0,0,0.10075209822764,0.169560592310488,0.386521706326594,0.545492241181669,0.860413786167011,1.34171076742555,1.19276791489337,1.04574548582567,0.518305275076852,3.78481276313443,0.72995471815166,0,1.28648187638577,1.38134921352481,0.928735856063958,1.44375896333917,0.236613600079688,0.168584690078102,0.482022059766964,0.55146986366197,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0.738155454624648,0,0.4115740113314,0,0,0,0,0,0,0.514703430895577,0.329250856225877,0,0.402115889646523,0.370353780634118,0,1.03993478527958,1.44331342025273,1.73895607462615,0.117408694235822,0.288732895522148,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.190493682876507,0,1.17217447210047,0,0.514137463516618,0,0,0.336393253036082,0,1.0267360014933,0.258543431515556,0,0.845302752556,0.26593811658487,0,2.31486636835928,1.41849132023278,1.0656887160644,0,0,0,0.325736184293735,0.355391948742546,2.37585561880029,0.301439377059586,0,0.099972991182057,0,0,0,0,0,1.42636905040718,0.289562613335158,0.61642896765115,0,0,0,0,0,1.01637849688985,0,0,0,0,0,0,0,0.858840442033979,1.00034104211935,0.271265023699736,0.207970861530807,0,0.157702415033935,0.117141414992713,0.300946099727719,2.27407504055985,1.03473071292505,0,0.921845842708516,0.521301686808497,0,0,0,0,0,0.606255142892519,0,0.907170879989041,0.248107807818777,0,0,0,0,0.160853921143607,0,0.925258162815933,0.177561725313127,1.06765302817952,1.03850885836724,0.464841513839837,0,0.200506470303285,0.368323955743585,0.34444334449382,0.910455840033585,0.131124414959424,1.80479845162965,1.23224539367064,3.92174884588428,1.46139224653261,1.68882606228601,0,1.53084334748864,0,3.08454505380579,0.812839312631559,0.501689773854853,1.78413391131527,0,1.79099803777743,0.219259876645935,0,1.28225062558195,0.656029291399411,0.650756789328606,0,0,0,0,0,0,1.64340221096607,0.308097234229289,0.15350367472613,0.137836572484531,0.966782203814463,1.0151168573996,1.02271952899321,0.0890320356467374,0.495854746082934,0.192190067365106,0,0.4046311234222,0,0,0.6970372701606,0.924100740528266,0,0.869932992075073,0.55597265731176,0,0,0,0,1.79128453917934,0.855877976067841,1.90921948755562,0,0,0,0.235624804691373,0.404364963146632,1.58510321173008,0,0.48763373908959,0.974853958525138,0,0.272999822815972,0.141405431953713,4.52032466480971,2.2054613741845,0.66343897524122,0.876901770507525,0,0.655894752046633,0.405820753925408,1.239293992399,0,0.717056761020258,0.196498082026242,0.35667105148125,1.77380532035299,0.211107635297664,0,1.13841952129715,0.699869440489966,1.05844323998063,0,1.08890984861323,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0.540031437238115,0,0.320472213382419,0,0.735120647943095,0.557409525377156,0.144269212976445,0.355709216742071,0.318852545457645,0.798317485731266,0,0.211673582723883,0.324621940274555,0.280797178113459,0,0.313359791546046,0,0.169291777801603,0.1605880751037,0.201799707191048,0,0,0.614481528616916,0.447352215784832,0.166849141711909,0.586164286206121,0.278406173895242,0,0,0,0,0,0,0.121360521749513,0,1.13654458722565,0,0,0,0,0,1.00177834520615,0.329607748453519,0,0,0,0.251932747854276,0.306806047506464,0,0,0.808815160325942,0,0,0,0,0,0,0,0,0,0,0,0.455173793141999,1.27126825146383,0,0,0,0.347249989866585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| ||
|short_description=p1@HMGA1P3 | |short_description=p1@HMGA1P3 | ||
}} | }} |
Latest revision as of 08:27, 16 September 2015
Short description: | p1@HMGA1P3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGA1P3_5end |
Coexpression cluster: | NA |
Association with transcript: | -94bp_to_ENST00000549577_5end |
EntrezGene: | NA |
HGNC: | 13323 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 5.91e-13 | 15 |
kidney cell | 3.86e-11 | 17 |
kidney epithelial cell | 3.86e-11 | 17 |
kidney tubule cell | 6.38e-10 | 10 |
nephron tubule epithelial cell | 6.38e-10 | 10 |
embryonic cell | 2.16e-08 | 250 |
kidney cortical cell | 3.45e-08 | 12 |
renal cortical epithelial cell | 3.45e-08 | 12 |
epithelial cell of tracheobronchial tree | 5.49e-07 | 9 |
epithelial cell of lower respiratory tract | 5.49e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 5.91e-13 | 15 |
renal tubule | 5.91e-13 | 15 |
nephron tubule | 5.91e-13 | 15 |
nephron | 5.91e-13 | 15 |
uriniferous tubule | 5.91e-13 | 15 |
nephrogenic mesenchyme | 5.91e-13 | 15 |
excretory tube | 5.45e-12 | 16 |
kidney epithelium | 5.45e-12 | 16 |
nephron tubule epithelium | 6.38e-10 | 10 |
cortex of kidney | 3.45e-08 | 12 |
renal parenchyma | 3.45e-08 | 12 |
epithelial tube | 5.70e-08 | 117 |
gonad | 1.07e-07 | 21 |
indifferent external genitalia | 1.07e-07 | 21 |
indifferent gonad | 1.07e-07 | 21 |
gonad primordium | 1.07e-07 | 21 |
external genitalia | 3.00e-07 | 22 |