FFCP PHASE1:Hg19::chr20:43514320..43514425,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr20:43514320..43514425,+
|short_description=p1@YWHAB
|description=CAGE_peak_1_at_YWHAB_5end
|association_with_transcript=0bp_to_ENST00000372839,ENST0000042826...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7529 | |EntrezGene=7529 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12849 | |HGNC=12849 | ||
|TSSclassifier=strong | |||
|UniProt=P31946,Q4VY19,Q4VY20 | |UniProt=P31946,Q4VY19,Q4VY20 | ||
|association_with_transcript=0bp_to_ENST00000372839,ENST00000428262,ENST00000445830,ENST00000479421,NM_003404,NM_139323,uc002xmt.2,uc002xmu.2_5end | |||
|cluster_id=chr20:43514320..43514425,+ | |||
|description=CAGE_peak_1_at_YWHAB_5end | |||
|id=chr20:43514320..43514425,+ | |||
|ontology_enrichment_celltype=CL:0000003!4.02e-12!722;CL:0000222!2.44e-10!119;CL:0002194!2.38e-09!63;CL:0000576!2.38e-09!63;CL:0000040!2.38e-09!63;CL:0000559!2.38e-09!63;CL:0000766!5.52e-09!76;CL:0002009!6.56e-09!65;CL:0002371!2.70e-08!591;CL:0000860!1.40e-07!45;CL:0000220!2.08e-07!246;CL:0000548!2.40e-07!679;CL:0000004!2.40e-07!679;CL:0000255!2.40e-07!679;CL:0000144!4.56e-07!625;CL:0002321!5.01e-07!248;CL:0000359!5.66e-07!32;CL:0002057!6.05e-07!42 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.16e-10,121;CL:0000473,3.12e-09,48;CL:0000234,3.12e-09,48;CL:0002194,7.09e-09,59;CL:0000576,7.09e-09,59;CL:0000040,7.09e-09,59;CL:0000559,7.09e-09,59;CL:0000766,1.66e-08,72;CL:0002009,1.96e-08,61;CL:0002321,4.17e-07,250;CL:0000359,5.66e-07,32;CL:0000860,6.05e-07,42;CL:0002057,6.05e-07,42 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001637!4.30e-10!42;UBERON:0003509!4.30e-10!42;UBERON:0004572!4.30e-10!42;UBERON:0000055!3.69e-09!69;UBERON:0001981!3.81e-09!60;UBERON:0007500!3.81e-09!60;UBERON:0004537!3.81e-09!60;UBERON:0006965!3.81e-09!60;UBERON:0002204!2.43e-08!167;UBERON:0003081!3.95e-08!216;UBERON:0002049!4.44e-08!79;UBERON:0007798!4.44e-08!79;UBERON:0004573!1.34e-07!33;UBERON:0004571!1.34e-07!33;UBERON:0000914!2.76e-07!83;UBERON:0002329!2.76e-07!83;UBERON:0003077!2.76e-07!83;UBERON:0003059!2.76e-07!83;UBERON:0007282!2.76e-07!83;UBERON:0009618!2.76e-07!83;UBERON:0007285!2.76e-07!83;UBERON:0004535!4.35e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.23e-07;42!UBERON:0003509;1.23e-07;42!UBERON:0004572;1.23e-07;42!UBERON:0004573;6.97e-07;33!UBERON:0004571;6.97e-07;33!UBERON:0007500;8.45e-07;56!UBERON:0001981;8.45e-07;56!UBERON:0004537;8.45e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,4.30e-10,42;UBERON:0003509,4.30e-10,42;UBERON:0004572,4.30e-10,42;UBERON:0007500,2.55e-09,59;UBERON:0001981,2.55e-09,59;UBERON:0004537,2.55e-09,59;UBERON:0006965,2.55e-09,59;UBERON:0000055,2.59e-09,68;UBERON:0002049,3.37e-08,78;UBERON:0007798,3.37e-08,78;UBERON:0002204,5.21e-08,167;UBERON:0004573,1.34e-07,33;UBERON:0004571,1.34e-07,33;UBERON:0003081,3.01e-07,203;UBERON:0004535,3.62e-07,109 | |||
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| ||
|short_description=p1@YWHAB | |||
}} | }} |
Latest revision as of 08:46, 16 September 2015
Short description: | p1@YWHAB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_YWHAB_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000372839, ENST00000428262, ENST00000445830, ENST00000479421, NM_003404, NM_139323, uc002xmt.2, uc002xmu.2_5end |
EntrezGene: | YWHAB |
HGNC: | 12849 |
UniProt: | P31946Q4VY19Q4VY20 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.16e-10 | 121 |
defensive cell | 3.12e-09 | 48 |
phagocyte | 3.12e-09 | 48 |
monopoietic cell | 7.09e-09 | 59 |
monocyte | 7.09e-09 | 59 |
monoblast | 7.09e-09 | 59 |
promonocyte | 7.09e-09 | 59 |
myeloid leukocyte | 1.66e-08 | 72 |
macrophage dendritic cell progenitor | 1.96e-08 | 61 |
embryonic cell | 4.17e-07 | 250 |
vascular associated smooth muscle cell | 5.66e-07 | 32 |
classical monocyte | 6.05e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.05e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
artery | 4.30e-10 | 42 |
arterial blood vessel | 4.30e-10 | 42 |
arterial system | 4.30e-10 | 42 |
epithelial tube open at both ends | 2.55e-09 | 59 |
blood vessel | 2.55e-09 | 59 |
blood vasculature | 2.55e-09 | 59 |
vascular cord | 2.55e-09 | 59 |
vessel | 2.59e-09 | 68 |
vasculature | 3.37e-08 | 78 |
vascular system | 3.37e-08 | 78 |
musculoskeletal system | 5.21e-08 | 167 |
systemic artery | 1.34e-07 | 33 |
systemic arterial system | 1.34e-07 | 33 |
lateral plate mesoderm | 3.01e-07 | 203 |
cardiovascular system | 3.62e-07 | 109 |