FFCP PHASE2:Hg19::chr20:45891250..45891274,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:23613 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript |HGNC=HGNC:9397...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=23613 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC= | |HGNC=9397 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q9ULU4 | ||
|association_with_transcript=-178bp_to_AF233453_5end | |association_with_transcript=-178bp_to_AF233453_5end | ||
|cluster_id=chr20:45891250..45891274,- | |cluster_id=chr20:45891250..45891274,- | ||
Latest revision as of 15:28, 16 September 2015
| Short description: | p32@ZMYND8 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_32_at_ZMYND8_5end |
| Coexpression cluster: | C78_lymphoma_plasma_tonsil_appendix_lymph_seminal_trachea |
| Association with transcript: | -178bp_to_AF233453_5end |
| EntrezGene: | ZMYND8 |
| HGNC: | 9397 |
| UniProt: | Q9ULU4 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p32@ZMYND8 |
|---|
0
2
4
6
8
10
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| precursor B cell | 5.84e-74 | 3 |
| mature B cell | 3.11e-50 | 2 |
| pre-B-II cell | 3.11e-50 | 2 |
| transitional stage B cell | 3.11e-50 | 2 |
| small pre-B-II cell | 3.11e-50 | 2 |
| immature B cell | 3.11e-50 | 2 |
| antibody secreting cell | 2.78e-26 | 1 |
| plasma cell | 2.78e-26 | 1 |
| plasmablast | 2.78e-26 | 1 |
| lymphocyte of B lineage | 4.95e-26 | 24 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| spleen | 1.30e-09 | 3 |
| gastrointestinal system mesentery | 1.30e-09 | 3 |
| stomach region | 1.30e-09 | 3 |
| mesentery | 1.30e-09 | 3 |
| gastrointestinal system serosa | 1.30e-09 | 3 |
| mesentery of stomach | 1.30e-09 | 3 |
| gut mesentery | 1.30e-09 | 3 |
| dorsal mesentery | 1.30e-09 | 3 |
| dorsal mesogastrium | 1.30e-09 | 3 |
| peritoneal cavity | 1.30e-09 | 3 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| lymphatic system cancer | 7.62e-26 | 1 |
| lymphosarcoma | 7.62e-26 | 1 |
| lymphoma | 4.76e-23 | 10 |
| hematologic cancer | 3.27e-08 | 51 |
| immune system cancer | 3.27e-08 | 51 |
Showing 1 to 5 of 5 entries
