FFCP PHASE1:Hg19::chr2:128397711..128397730,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55679 | |EntrezGene=55679 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=16084 | |HGNC=16084 | ||
|TSSclassifier=strong | |||
|UniProt=A0PJ44 | |UniProt=A0PJ44 | ||
|association_with_transcript=-18bp_to_BC008977_5end | |association_with_transcript=-18bp_to_BC008977_5end | ||
|cluster_id=chr2:128397711..128397730,- | |||
|coexpression_cluster_id=C47 | |coexpression_cluster_id=C47 | ||
|description=CAGE_peak_10_at_LIMS2_5end | |description=CAGE_peak_10_at_LIMS2_5end | ||
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|ontology_enrichment_celltype=CL:0000236!1.61e-19!14;CL:0000945!1.58e-17!24;CL:0000826!1.58e-17!24;CL:0000542!1.07e-09!53;CL:0000051!1.07e-09!53;CL:0000838!5.26e-09!52 | |ontology_enrichment_celltype=CL:0000236!1.61e-19!14;CL:0000945!1.58e-17!24;CL:0000826!1.58e-17!24;CL:0000542!1.07e-09!53;CL:0000051!1.07e-09!53;CL:0000838!5.26e-09!52 | ||
|ontology_enrichment_celltype_v019=CL:0000236;1.45e-57;13!CL:0000945;8.29e-41;24!CL:0000542;3.93e-19;53 | |ontology_enrichment_celltype_v019=CL:0000236;1.45e-57;13!CL:0000945;8.29e-41;24!CL:0000542;3.93e-19;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.26e-53,14;CL:0000945,7.27e-41,24;CL:0000826,7.27e-41,24;CL:0000838,6.94e-23,52;CL:0000542,2.19e-22,53;CL:0000051,2.19e-22,53;CL:0002087,2.53e-08,115;CL:0002031,7.69e-08,120;CL:0000738,1.43e-07,136 | |||
|ontology_enrichment_development_v019=CL:0000051;3.93e-19;53!UBERON:0004872;2.24e-07;7 | |ontology_enrichment_development_v019=CL:0000051;3.93e-19;53!UBERON:0004872;2.24e-07;7 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.98e-18!115 | |ontology_enrichment_uberon=UBERON:0007023!1.98e-18!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004177;1.74e-17;5!UBERON:0005057;1.74e-17;5!UBERON:0002370;1.50e-11;2!UBERON:0005058;1.50e-11;2!UBERON:0009113;1.50e-11;2!UBERON:0002106;2.72e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0004177;1.74e-17;5!UBERON:0005057;1.74e-17;5!UBERON:0002370;1.50e-11;2!UBERON:0005058;1.50e-11;2!UBERON:0009113;1.50e-11;2!UBERON:0002106;2.72e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,1.48e-12,7;UBERON:0005057,1.48e-12,7;UBERON:0002106,2.67e-08,3;UBERON:0004854,2.67e-08,3;UBERON:0009034,2.67e-08,3;UBERON:0002095,2.67e-08,3;UBERON:0004782,2.67e-08,3;UBERON:0003281,2.67e-08,3;UBERON:0009664,2.67e-08,3;UBERON:0002296,2.67e-08,3;UBERON:0005602,2.67e-08,3;UBERON:0001179,2.67e-08,3;UBERON:0006293,2.67e-08,3 | |||
|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0,0,0,0,4.880433636559,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,15.839662001519,8.7382177801941,7.11607403090844,4.26730222566507,6.00593980554019,11.4950487990897,7.27149360063348,5.72432252721218,5.12291672198504,8.22132065119314,3.05818582500183,1.32171328579026,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0.83593247695339,0,0,0,0,0,0,0,0.512365278902701,0.130059347559878,0.164437904603676,0,0.869409257205157,0,0,0,0.339928028092699,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,7.50487269004906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.946214490203608,0,0,0,0,0,0,0.0868836144680828,0,0.686286847621712,0.413536052245775,0.431428401637234,0.426910231213777,0,0,0,0.496215615637554,0,0.280660094433074,0.256278298511402,0,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0.137836572484531,0,0,0.170453254832202,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,0.952927101831156,1.64544909234478,0,0,0,0.106824071127473,0,0,0.929015875628594,5.04942245417557,8.25245382841604,0.478278818186467,0,0,0,0,0,1.14117339516596,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.38141957765574,0.251932747854276,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.31900115973192,0.0915975934018623,0,5.10966490978682,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.83309043480088,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0.91227394607833,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0.387956065953678,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.268733889946905,0,0,0,0,0.0674035438541849,0,0.0846733320657845,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39669780522807,0,0,0.213574825135389,0.157204305099666,0.414239055347196,3.47316215268366,0,1.70509637733254,0,0,0,0,0,0,0,0.488105059607853,0.1251909307065,0,0,0.18628920882415,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.128458450192919,0,0.159633859057151,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0,0.0887023701626388,0.460935950223117,0,0.0679697329768317,0.131545547125698,0,0,0.156986185701028,0.157115589916002,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,1.27016115057279,0.22910686854405,0,0.955538938977433,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,1.22574160876953,0,0,0.297046400327086,0,0.509781344063451,6.76684209454946,10.6355515156402,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0.36757959813938,0,0.0757786982182394,0,0,0.310298987585686,0.213233981900981,0.476128862927481,5.68382406556854,3.78655757204733,0,0.190941474834495,0.202117188958219,0,0,2.49202596153974,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.00636896795513,0 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|phase1_expression=0.363356758541113,1.07050261945492,0.140954404095971,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0,0,0,0,4.880433636559,0.426507697462265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,15.839662001519,8.7382177801941,7.11607403090844,4.26730222566507,6.00593980554019,11.4950487990897,7.27149360063348,5.72432252721218,5.12291672198504,8.22132065119314,3.05818582500183,1.32171328579026,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0.83593247695339,0,0,0,0,0,0,0,0.512365278902701,0.130059347559878,0.164437904603676,0,0.869409257205157,0,0,0,0.339928028092699,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0.18611685633159,0,0,0,0.184099797284599,0.323292113637624,0,0.10075209822764,0,0,0,0,0,0,0,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,7.50487269004906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0.946214490203608,0,0,0,0,0,0,0.0868836144680828,0,0.686286847621712,0.413536052245775,0.431428401637234,0.426910231213777,0,0,0,0.496215615637554,0,0.280660094433074,0.256278298511402,0,0.482561763430822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,1.6068392984416,0,0,0,0.137836572484531,0,0,0.170453254832202,1.24644849905432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0.764637207142375,0.569647187174163,0.952927101831156,1.64544909234478,0,0,0,0.106824071127473,0,0,0.929015875628594,5.04942245417557,8.25245382841604,0.478278818186467,0,0,0,0,0,1.14117339516596,0,0,0,0.321176150207399,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,1.38141957765574,0.251932747854276,0,0,0.311039587661807,0,0,0,0.197286811273867,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.384751292518985,0,0,0,0,0.31900115973192,0.0915975934018623,0,5.10966490978682,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,1.83309043480088,0,0,0,0.202203398942031,0.802577647298789,0.234264445725339,0.91227394607833,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0.387956065953678,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.268733889946905,0,0,0,0,0.0674035438541849,0,0.0846733320657845,0,0.408610218334727,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39669780522807,0,0,0.213574825135389,0.157204305099666,0.414239055347196,3.47316215268366,0,1.70509637733254,0,0,0,0,0,0,0,0.488105059607853,0.1251909307065,0,0,0.18628920882415,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.796191777397232,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0.128458450192919,0,0.159633859057151,0.205116364240755,0.252071696221718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135075169236789,0,0,0.0634158101939068,0,0.548257766857182,1.48863353516788,0,0,0,0,0,0,0.0887023701626388,0.460935950223117,0,0.0679697329768317,0.131545547125698,0,0,0.156986185701028,0.157115589916002,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,1.27016115057279,0.22910686854405,0,0.955538938977433,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.437119121007915,0,1.22574160876953,0,0,0.297046400327086,0,0.509781344063451,6.76684209454946,10.6355515156402,0,0,0,0,0,0,0.286679166302903,0,0.135982980381829,0,0.5290268405154,0,0,0,0,0,0,0,0,0.36757959813938,0,0.0757786982182394,0,0,0.310298987585686,0.213233981900981,0.476128862927481,5.68382406556854,3.78655757204733,0,0.190941474834495,0.202117188958219,0,0,2.49202596153974,0.0717222053926763,0,0,0,0,0,0,0,0,0,1.00636896795513,0 | ||
|short_description=p10@LIMS2 | |short_description=p10@LIMS2 | ||
}} | }} |
Latest revision as of 20:53, 16 September 2015
Short description: | p10@LIMS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LIMS2_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | -18bp_to_BC008977_5end |
EntrezGene: | LIMS2 |
HGNC: | 16084 |
UniProt: | A0PJ44 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.26e-53 | 14 |
lymphocyte of B lineage | 7.27e-41 | 24 |
pro-B cell | 7.27e-41 | 24 |
lymphoid lineage restricted progenitor cell | 6.94e-23 | 52 |
lymphocyte | 2.19e-22 | 53 |
common lymphoid progenitor | 2.19e-22 | 53 |
nongranular leukocyte | 2.53e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 7.69e-08 | 120 |
leukocyte | 1.43e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 1.48e-12 | 7 |
immune organ | 1.48e-12 | 7 |
spleen | 2.67e-08 | 3 |
gastrointestinal system mesentery | 2.67e-08 | 3 |
stomach region | 2.67e-08 | 3 |
mesentery | 2.67e-08 | 3 |
gastrointestinal system serosa | 2.67e-08 | 3 |
mesentery of stomach | 2.67e-08 | 3 |
gut mesentery | 2.67e-08 | 3 |
dorsal mesentery | 2.67e-08 | 3 |
dorsal mesogastrium | 2.67e-08 | 3 |
peritoneal cavity | 2.67e-08 | 3 |
spleen primordium | 2.67e-08 | 3 |