FFCP PHASE2:Hg19::chr8:143851234..143851252,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:66004 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:29604 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=66004 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=29604 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q86SR0 | ||
|association_with_transcript=0bp_to_NM_177458,uc003yxa.2_5end | |association_with_transcript=0bp_to_NM_177458,uc003yxa.2_5end | ||
|cluster_id=chr8:143851234..143851252,- | |cluster_id=chr8:143851234..143851252,- |
Latest revision as of 21:24, 16 September 2015
Short description: | p2@LYNX1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LYNX1_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_NM_177458, uc003yxa.2_5end |
EntrezGene: | LYNX1 |
HGNC: | 29604 |
UniProt: | Q86SR0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p2@LYNX1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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endo-epithelial cell | 5.15e-32 | 42 |
respiratory epithelial cell | 7.92e-28 | 13 |
endodermal cell | 1.36e-21 | 58 |
acinar cell | 7.22e-17 | 5 |
epithelial cell of tracheobronchial tree | 1.02e-16 | 9 |
epithelial cell of lower respiratory tract | 1.02e-16 | 9 |
epithelial cell of alimentary canal | 7.55e-15 | 20 |
protein secreting cell | 5.29e-14 | 6 |
transitional epithelial cell | 5.72e-14 | 4 |
urothelial cell | 5.72e-14 | 4 |
Showing 1 to 10 of 26 entries
Ontology term | p-value | n |
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respiratory system | 1.18e-25 | 74 |
endoderm-derived structure | 4.02e-20 | 160 |
endoderm | 4.02e-20 | 160 |
presumptive endoderm | 4.02e-20 | 160 |
respiratory tract | 3.41e-19 | 54 |
oral opening | 8.48e-17 | 22 |
urothelium | 1.70e-16 | 5 |
tracheobronchial tree | 6.07e-16 | 15 |
lower respiratory tract | 6.07e-16 | 15 |
foregut | 2.48e-14 | 87 |
Showing 1 to 10 of 55 entries