FFCP PHASE1:Hg19::chr4:178231020..178231036,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:178231020..178231036,+ to FFCP PHASE1:Hg19::chr4:178231020..178231036,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55247 | |EntrezGene=55247 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24573 | |HGNC=24573 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAV1 | |UniProt=D6RAV1 | ||
|association_with_transcript=-20bp_to_ENST00000513321_5end | |||
|cluster_id=chr4:178231020..178231036,+ | |||
|coexpression_cluster_id=C4397 | |||
|description=CAGE_peak_1_at_NEIL3_5end | |||
|id=chr4:178231020..178231036,+ | |||
|ontology_enrichment_celltype=CL:0000548!3.21e-14!679;CL:0000004!3.21e-14!679;CL:0000255!3.21e-14!679;CL:0000012!3.45e-14!682;CL:0000066!1.12e-13!254;CL:0000003!1.37e-09!722;CL:0000063!1.64e-07!578 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.99e-13,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.82e-47!235;DOID:14566!1.62e-46!239;DOID:0050686!6.70e-26!137;DOID:2531!1.04e-23!51;DOID:0060083!1.04e-23!51;DOID:0050687!1.70e-20!143;DOID:1240!8.01e-19!39;DOID:305!8.25e-15!106;DOID:8692!3.63e-14!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;2.08e-15;39!DOID:2531;4.87e-15;51!DOID:0060083;4.87e-15;51!DOID:8692;3.60e-14;31!DOID:0050686;9.44e-07;137 | |||
|ontology_enrichment_disease_v019_2=DOID:162,8.32e-47,235;DOID:14566,9.56e-46,239;DOID:0050686,7.39e-25,137;DOID:2531,1.14e-24,51;DOID:0060083,1.14e-24,51;DOID:0050687,4.31e-20,143;DOID:1240,1.43e-19,39;DOID:305,8.76e-15,106;DOID:8692,1.04e-14,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.363356758541113,1.07050261945492,0,1.0007329835313,0.446961094427288,0,0,0.631719873426831,0,5.40614660303319,0.697801167972428,5.67947567538448,3.16520373874144,0.123766352960047,0,0,0,0,0,5.17108443922509,2.24400760368678,0.626909442956176,10.5907315238491,13.4136936571427,8.28581421325698,5.57817861960044,6.15754420874593,7.79236735005425,0,0,0,2.75826367343678,3.0120591877825,0.369754010166788,19.9865377497178,15.3542771086415,7.04641054403633,0,0,0,0.223915474239924,0.32389366601898,0,0,0.755751887377619,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0.889509253863555,0,0.400395987036012,0,0,0,0,0,0,0,0.560508562981536,9.2184429671277,0.196709770113833,0,0.205601498999509,6.68745981562712,0,0,0,9.02424700769906,2.3568472597987,1.10766947291811,0.812411591295047,11.0158534964081,7.80356085359269,12.8261565590867,8.29050053357545,9.85330491499179,0,0,0,17.2230200900301,0,0,0.253019692019503,0.637130828648193,0,0.950452044448374,0.301150238155546,0.255973222308837,2.49861453104692,0.947109008176067,0,0,0.534880391567015,0,0,1.34140171940727,4.47518966452356,10.1202962667679,1.50401373190767,0.434539556882471,5.5670016293577,0,7.9409246417817,2.88248216701333,3.60122621341817,0.851363990735132,4.00724817121796,7.78647329847302,0,0.174129737299267,0,0,0,0,5.36658499890104,3.4409383804245,1.73570250803797,3.95715559346807,2.09749718104953,2.47606237746061,2.92592953151535,2.58416759169329,2.13459757612026,2.67776490211736,1.20848795132744,1.52054421143703,1.22031028774085,4.41195696415042,0,9.82297011124877,4.4905874525234,9.79719880204903,3.06633274931766,2.84779697870439,2.38162267109529,1.31780417436063,0,0.872188104285069,0.993943903390637,1.64619665163954,1.19168262731897,4.87622255272983,4.965357350777,1.68203280042692,1.06748995729705,0.98667019366864,0.933633106199299,2.96363478553314,3.10577615915572,1.66493170409425,0,2.10889288650417,1.5608003841516,7.41613368007784,1.49448680551801,12.4480568562391,11.1692331614011,9.41020404905065,1.63323337003915,12.6519346831121,0.929932030581889,3.56400857184616,1.48360157567134,0.910161361938026,0,18.0119641930851,16.3905261032273,6.92660288710457,4.82875382968922,1.5324389789951,2.85452311922534,4.76415169272088,11.1221574127094,1.49490172172997,5.29829752898905,12.6038260355449,3.09157587715317,1.28820270022815,1.48893485065272,13.5021065793013,3.02054715999716,5.55354303337052,1.38074847963449,1.61646056818812,4.61512470271599,5.44061330429257,6.61286310010902,1.54608682530637,2.18196896472668,3.15485054927904,6.34263271873896,5.56625026950238,8.01738205799677,6.11600224590686,5.80337957013945,2.91981887260664,1.56449532329816,0,1.38134921352481,0,0,6.7434876022711,6.57480291304597,8.19437501603839,5.95587452754927,5.88274499049497,6.16903609688851,2.56179485504312,6.27908688401107,4.61696588335668,0,1.40241773803446,2.4694440679884,0,0,0,0,72.8414114034173,5.16551441881077,2.91665277507493,1.09750285408626,0,9.34919443428167,5.37012981919472,2.6064664424826,1.03993478527958,5.77325368101093,2.43453850447661,0.70445216541493,1.29929802984966,1.38895653772983,1.90254152234598,7.11183958163348,1.71697232418975,1.23108503043699,2.80805118167085,6.39113997841531,2.81201501960331,0.839910640994298,2.83550194484773,8.95585227028483,10.7534557250166,6.51750554580859,5.41929561685538,5.63509977684647,0,0,0.12624243342638,11.8106083383434,5.34783795781589,7.03304683260282,1.71072446022705,11.1053692119589,9.91132090884928,2.00078502841405,7.17638939810309,3.92364061949952,14.0809508776224,0,0,5.071816515336,2.39344304926383,3.12022310734098,6.68739173081569,5.67396528093113,4.79559922228979,1.71573592389777,0,1.64648067356154,7.81766842304964,1.42156779497018,7.91951872933429,0,0,1.29964888536674,0,0.502257091432126,4.21667878966063,2.15662369942424,1.14861935834114,5.70547620162874,3.18518874668674,1.64381058040307,3.04403637507822,61.1984886204659,0,0.431255149719035,0.128343036279748,6.09827098133912,0,1.54657762555539,3.68535783735567,1.27587750330633,0,0,0,0.12269149171914,0,0.542530047399471,0.207970861530807,1.78428988797162,1.10391690523754,1.87426263988341,0.300946099727719,0,0,7.3064815838898,2.58116835958384,4.43106433787223,0.195801157462741,0,0.413536052245775,0.215714200818617,0.106727557803444,1.5156378572313,3.32870879020994,4.23346410661552,0.496215615637554,2.60885354589706,1.68396056659844,0.640695746278505,1.02341449813341,0.321707842287215,0,6.47680713971153,2.13074070375753,5.66677376495283,6.75030757938707,3.37010097533882,5.31781578203138,0,0,9.75922809399157,6.91946438425525,0.262248829918848,4.06079651616671,5.85316561993552,6.27479815341484,2.92278449306521,5.91089121800104,3.4120015221269,1.53084334748864,7.34114114747274,1.54227252690289,2.16757150035082,1.00337954770971,5.3524017339458,0.831076008928724,2.68649705666614,32.8889814968902,36.3395276924612,7.94995387860806,4.59220503979588,3.57916234130733,0.309123034943167,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| ||
|short_description=p1@NEIL3 | |||
}} | }} |
Latest revision as of 22:54, 16 September 2015
Short description: | p1@NEIL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NEIL3_5end |
Coexpression cluster: | C4397_acute_chronic_NK_Hodgkin_thymus_glioblastoma_non |
Association with transcript: | -20bp_to_ENST00000513321_5end |
EntrezGene: | NEIL3 |
HGNC: | 24573 |
UniProt: | D6RAV1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.99e-13 | 253 |
Ontology term | p-value | n |
---|---|---|
cancer | 8.32e-47 | 235 |
disease of cellular proliferation | 9.56e-46 | 239 |
organ system cancer | 7.39e-25 | 137 |
hematologic cancer | 1.14e-24 | 51 |
immune system cancer | 1.14e-24 | 51 |
cell type cancer | 4.31e-20 | 143 |
leukemia | 1.43e-19 | 39 |
carcinoma | 8.76e-15 | 106 |
myeloid leukemia | 1.04e-14 | 31 |