FFCP PHASE1:Hg19::chr13:28541477..28541493,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |EntrezGene=1045 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1806 | |HGNC=1806 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_ENST00000548877_5end | |association_with_transcript=-15bp_to_ENST00000548877_5end | ||
|cluster_id=chr13:28541477..28541493,- | |||
|coexpression_cluster_id=C86 | |coexpression_cluster_id=C86 | ||
|description=CAGE_peak_6_at_CDX2_5end | |description=CAGE_peak_6_at_CDX2_5end | ||
|id=chr13:28541477..28541493,- | |id=chr13:28541477..28541493,- | ||
|ontology_enrichment_celltype=CL:0002253!5.96e-26!2;CL:0000319!8.58e-14!1;CL:0002563!1.72e-13!4;CL:0000453!9.62e-11!5;CL:0002535!1.45e-07!2;CL:0000159!1.54e-07!2 | |ontology_enrichment_celltype=CL:0002253!5.96e-26!2;CL:0000319!8.58e-14!1;CL:0002563!1.72e-13!4;CL:0000453!9.62e-11!5;CL:0002535!1.45e-07!2;CL:0000159!1.54e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002253;4.32e-26;2!CL:0002563;8.82e-14;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002253,4.32e-26,2;CL:0002563,8.82e-14,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3030!8.58e-14!1;DOID:3119!1.18e-08!14;DOID:299!3.42e-08!25;DOID:4929!2.25e-07!2 | |ontology_enrichment_disease=DOID:3030!8.58e-14!1;DOID:3119!1.18e-08!14;DOID:299!3.42e-08!25;DOID:4929!2.25e-07!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000059!5.43e-72!11;UBERON:0004907!4.02e-62!5;UBERON:0000160!1.94e-52!27;UBERON:0001052!2.95e-50!4;UBERON:0001155!8.33e-50!9;UBERON:0005409!1.55e-40!35;UBERON:0001046!1.97e-16!19;UBERON:0001154!1.10e-13!1;UBERON:0001153!1.10e-13!1;UBERON:0001242!1.72e-13!4;UBERON:0001262!1.72e-13!4;UBERON:0004786!1.72e-13!4;UBERON:0004808!1.72e-13!4;UBERON:0001277!1.72e-13!4;UBERON:0003350!5.57e-11!5;UBERON:0001045!1.08e-10!11;UBERON:0004921!2.82e-10!129;UBERON:0004185!2.82e-10!129;UBERON:0001007!2.53e-08!155;UBERON:0001555!2.53e-08!155;UBERON:0007026!2.53e-08!155;UBERON:0002108!5.65e-08!14;UBERON:0006955!1.45e-07!2;UBERON:0004801!1.45e-07!2;UBERON:0004119!1.62e-07!169;UBERON:0000925!1.62e-07!169;UBERON:0006595!1.62e-07!169;UBERON:0000063!1.73e-07!97 | |ontology_enrichment_uberon=UBERON:0000059!5.43e-72!11;UBERON:0004907!4.02e-62!5;UBERON:0000160!1.94e-52!27;UBERON:0001052!2.95e-50!4;UBERON:0001155!8.33e-50!9;UBERON:0005409!1.55e-40!35;UBERON:0001046!1.97e-16!19;UBERON:0001154!1.10e-13!1;UBERON:0001153!1.10e-13!1;UBERON:0001242!1.72e-13!4;UBERON:0001262!1.72e-13!4;UBERON:0004786!1.72e-13!4;UBERON:0004808!1.72e-13!4;UBERON:0001277!1.72e-13!4;UBERON:0003350!5.57e-11!5;UBERON:0001045!1.08e-10!11;UBERON:0004921!2.82e-10!129;UBERON:0004185!2.82e-10!129;UBERON:0001007!2.53e-08!155;UBERON:0001555!2.53e-08!155;UBERON:0007026!2.53e-08!155;UBERON:0002108!5.65e-08!14;UBERON:0006955!1.45e-07!2;UBERON:0004801!1.45e-07!2;UBERON:0004119!1.62e-07!169;UBERON:0000925!1.62e-07!169;UBERON:0006595!1.62e-07!169;UBERON:0000063!1.73e-07!97 | ||
|ontology_enrichment_uberon_v019=UBERON:0001155;1.37e-87;9!UBERON:0000059;6.65e-72;11!UBERON:0000160;2.03e-44;17!UBERON:0005409;5.16e-35;22!UBERON:0004921;5.10e-24;33!UBERON:0001052;8.82e-14;4!UBERON:0001242;8.82e-14;4!UBERON:0001262;8.82e-14;4!UBERON:0004786;8.82e-14;4!UBERON:0004808;8.82e-14;4!UBERON:0001277;8.82e-14;4!UBERON:0004907;2.66e-11;5!UBERON:0001555;4.39e-10;54!UBERON:0000485;1.89e-08;7!UBERON:0003929;1.89e-08;7!UBERON:0003350;1.49e-07;8!UBERON:0001007;6.31e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001155,1.37e-87,9;UBERON:0000059,6.65e-72,11;UBERON:0000160,2.03e-44,17;UBERON:0005409,4.21e-31,25;UBERON:0001052,8.82e-14,4;UBERON:0001242,8.82e-14,4;UBERON:0001262,8.82e-14,4;UBERON:0004786,8.82e-14,4;UBERON:0004808,8.82e-14,4;UBERON:0001277,8.82e-14,4;UBERON:0004907,2.66e-11,5;UBERON:0003350,1.49e-07,8;UBERON:0004921,1.75e-07,118;UBERON:0000485,7.48e-07,9 | |||
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|short_description=p6@CDX2 | |short_description=p6@CDX2 | ||
}} | }} |
Latest revision as of 23:35, 16 September 2015
Short description: | p6@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -15bp_to_ENST00000548877_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of large intestine | 4.32e-26 | 2 |
intestinal epithelial cell | 8.82e-14 | 4 |
Ontology term | p-value | n |
---|---|---|
colon | 1.37e-87 | 9 |
large intestine | 6.65e-72 | 11 |
intestine | 2.03e-44 | 17 |
gastrointestinal system | 4.21e-31 | 25 |
rectum | 8.82e-14 | 4 |
intestinal mucosa | 8.82e-14 | 4 |
wall of intestine | 8.82e-14 | 4 |
gastrointestinal system mucosa | 8.82e-14 | 4 |
gastrointestinal system epithelium | 8.82e-14 | 4 |
intestinal epithelium | 8.82e-14 | 4 |
lower digestive tract | 2.66e-11 | 5 |
epithelium of mucosa | 1.49e-07 | 8 |
subdivision of digestive tract | 1.75e-07 | 118 |
simple columnar epithelium | 7.48e-07 | 9 |