FFCP PHASE1:Hg19::chr4:185274626..185274638,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728175 | |EntrezGene=728175 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=491bp_to_ENST00000317596,NR_040108,uc003iwd.1_5end | |association_with_transcript=491bp_to_ENST00000317596,NR_040108,uc003iwd.1_5end | ||
|cluster_id=chr4:185274626..185274638,- | |||
|coexpression_cluster_id=C36 | |||
|description=CAGE_peak_6_at_LOC728175_5end | |description=CAGE_peak_6_at_LOC728175_5end | ||
|id=chr4:185274626..185274638,- | |id=chr4:185274626..185274638,- | ||
|ontology_enrichment_celltype=CL:0000945!1.29e-36!24;CL:0000826!1.29e-36!24;CL:0000838!2.12e-24!52;CL:0000542!6.51e-24!53;CL:0000051!6.51e-24!53;CL:0000785!4.37e-23!2;CL:0000955!4.37e-23!2;CL:0000818!4.37e-23!2;CL:0000954!4.37e-23!2;CL:0000816!4.37e-23!2;CL:0000817!9.80e-16!3;CL:0000946!1.57e-12!1;CL:0000786!1.57e-12!1;CL:0000980!1.57e-12!1;CL:0002127!1.75e-12!1;CL:0000914!1.75e-12!1;CL:0000911!1.75e-12!1;CL:0000814!1.75e-12!1;CL:0002042!1.75e-12!1;CL:0002039!1.75e-12!1;CL:0002040!1.75e-12!1;CL:0002041!1.75e-12!1;CL:0000819!2.46e-12!1;CL:0002087!1.12e-11!119;CL:0002031!3.85e-11!124;CL:0000738!1.11e-09!140;CL:0002032!5.89e-08!165;CL:0000837!5.89e-08!165;CL:0000037!1.46e-07!172;CL:0000566!1.46e-07!172;CL:0000988!4.73e-07!182;CL:0000893!7.20e-07!2;CL:0002489!7.20e-07!2;CL:0000809!7.20e-07!2;CL:0000808!7.20e-07!2;CL:0000894!7.20e-07!2;CL:0000806!7.20e-07!2;CL:0000807!7.20e-07!2;CL:0000805!7.20e-07!2;CL:0002425!7.20e-07!2 | |ontology_enrichment_celltype=CL:0000945!1.29e-36!24;CL:0000826!1.29e-36!24;CL:0000838!2.12e-24!52;CL:0000542!6.51e-24!53;CL:0000051!6.51e-24!53;CL:0000785!4.37e-23!2;CL:0000955!4.37e-23!2;CL:0000818!4.37e-23!2;CL:0000954!4.37e-23!2;CL:0000816!4.37e-23!2;CL:0000817!9.80e-16!3;CL:0000946!1.57e-12!1;CL:0000786!1.57e-12!1;CL:0000980!1.57e-12!1;CL:0002127!1.75e-12!1;CL:0000914!1.75e-12!1;CL:0000911!1.75e-12!1;CL:0000814!1.75e-12!1;CL:0002042!1.75e-12!1;CL:0002039!1.75e-12!1;CL:0002040!1.75e-12!1;CL:0002041!1.75e-12!1;CL:0000819!2.46e-12!1;CL:0002087!1.12e-11!119;CL:0002031!3.85e-11!124;CL:0000738!1.11e-09!140;CL:0002032!5.89e-08!165;CL:0000837!5.89e-08!165;CL:0000037!1.46e-07!172;CL:0000566!1.46e-07!172;CL:0000988!4.73e-07!182;CL:0000893!7.20e-07!2;CL:0002489!7.20e-07!2;CL:0000809!7.20e-07!2;CL:0000808!7.20e-07!2;CL:0000894!7.20e-07!2;CL:0000806!7.20e-07!2;CL:0000807!7.20e-07!2;CL:0000805!7.20e-07!2;CL:0002425!7.20e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.93e-27;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,6.34e-27,24;CL:0000826,6.34e-27,24;CL:0000838,7.48e-13,52;CL:0000542,1.27e-12,53;CL:0000051,1.27e-12,53 | |||
|ontology_enrichment_development_v019=UBERON:0004872;5.70e-07;7 | |||
|ontology_enrichment_disease=DOID:0060058!4.67e-18!10;DOID:630!1.11e-12!1;DOID:0050177!1.11e-12!1;DOID:0050427!1.11e-12!1;DOID:2355!1.40e-12!1;DOID:0060073!2.46e-12!1;DOID:8675!2.46e-12!1;DOID:2531!1.98e-07!51;DOID:0060083!1.98e-07!51;DOID:74!6.42e-07!2;DOID:154!7.61e-07!2;DOID:4236!7.61e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:630;3.30e-40;1!DOID:0050177;3.30e-40;1!DOID:0050427;3.30e-40;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.30e-40,1;DOID:0050177,3.30e-40,1;DOID:0050427,3.30e-40,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!2.22e-07!7;UBERON:0003127!9.02e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;1.60e-14;3!UBERON:0004177;2.97e-09;5!UBERON:0005057;2.97e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,1.40e-14,3;UBERON:0004854,1.40e-14,3;UBERON:0009034,1.40e-14,3;UBERON:0002095,1.40e-14,3;UBERON:0004782,1.40e-14,3;UBERON:0003281,1.40e-14,3;UBERON:0009664,1.40e-14,3;UBERON:0002296,1.40e-14,3;UBERON:0005602,1.40e-14,3;UBERON:0001179,1.40e-14,3;UBERON:0006293,1.40e-14,3;UBERON:0004177,5.38e-07,7;UBERON:0005057,5.38e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29240217243854,3.44822475689772,2.36132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76205998859206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39858774219829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29240217243854,3.44822475689772,2.36132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76205998859206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39858774219829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,1.28227396921293 | ||
|short_description=p6@LOC728175 | |short_description=p6@LOC728175 | ||
}} | }} |
Latest revision as of 01:09, 17 September 2015
Short description: | p6@LOC728175 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LOC728175_5end |
Coexpression cluster: | C36_B_b_splenic_plasma_xeroderma_adrenal_Burkitt |
Association with transcript: | 491bp_to_ENST00000317596, NR_040108, uc003iwd.1_5end |
EntrezGene: | LOC728175 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 6.34e-27 | 24 |
pro-B cell | 6.34e-27 | 24 |
lymphoid lineage restricted progenitor cell | 7.48e-13 | 52 |
lymphocyte | 1.27e-12 | 53 |
common lymphoid progenitor | 1.27e-12 | 53 |
Ontology term | p-value | n |
---|---|---|
spleen | 1.40e-14 | 3 |
gastrointestinal system mesentery | 1.40e-14 | 3 |
stomach region | 1.40e-14 | 3 |
mesentery | 1.40e-14 | 3 |
gastrointestinal system serosa | 1.40e-14 | 3 |
mesentery of stomach | 1.40e-14 | 3 |
gut mesentery | 1.40e-14 | 3 |
dorsal mesentery | 1.40e-14 | 3 |
dorsal mesogastrium | 1.40e-14 | 3 |
peritoneal cavity | 1.40e-14 | 3 |
spleen primordium | 1.40e-14 | 3 |
hemopoietic organ | 5.38e-07 | 7 |
immune organ | 5.38e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.30e-40 | 1 |
monogenic disease | 3.30e-40 | 1 |
xeroderma pigmentosum | 3.30e-40 | 1 |