FFCP PHASE1:Hg19::chr1:152815327..152815336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=448835 | |EntrezGene=448835 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31824 | |HGNC=31824 | ||
|TSSclassifier=strong | |||
|UniProt=A0A183 | |UniProt=A0A183 | ||
|association_with_transcript=0bp_to_NM_001128600,uc001fas.3_5end | |||
|cluster_id=chr1:152815327..152815336,+ | |||
|coexpression_cluster_id=C208 | |||
|description=CAGE_peak_1_at_LCE6A_5end | |||
|id=chr1:152815327..152815336,+ | |||
|ontology_enrichment_celltype=CL:0000622!2.80e-21!5;CL:0000362!1.01e-20!8;CL:0002159!6.78e-18!13;CL:0000154!9.03e-18!6;CL:0000317!4.47e-14!2;CL:1000448!4.47e-14!2;CL:0002308!4.47e-14!2;CL:0002140!4.47e-14!2;CL:0000312!8.72e-13!5;CL:0000453!2.32e-12!5;CL:0000150!6.63e-12!9;CL:0000240!9.78e-11!6;CL:0000311!9.78e-11!6;CL:0000079!9.78e-11!6;CL:0000237!9.78e-11!6;CL:0000036!9.78e-11!6;CL:0000357!9.78e-11!6;CL:0000114!9.78e-11!6;CL:0002623!8.52e-10!3;CL:0002077!6.43e-09!33;CL:0000990!4.50e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000312;6.32e-33;5!CL:0000362;4.09e-32;9!CL:0000240;1.41e-27;6!CL:0000311;1.41e-27;6!CL:0000079;1.41e-27;6!CL:0000237;1.41e-27;6!CL:0002159;7.92e-21;14!CL:0000622;2.02e-15;5!CL:0000154;5.11e-13;6!CL:0000317;3.27e-10;2!CL:1000448;3.27e-10;2!CL:0002308;3.27e-10;2!CL:0002140;3.27e-10;2!CL:0000150;5.42e-09;9!CL:0002077;7.39e-09;34!CL:0002623;1.93e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000312,6.67e-33,5;CL:0000362,3.93e-32,9;CL:0000240,1.47e-27,6;CL:0000311,1.47e-27,6;CL:0000079,1.47e-27,6;CL:0000237,1.47e-27,6;CL:0000036,1.47e-27,6;CL:0000357,1.47e-27,6;CL:0000114,1.47e-27,6;CL:0002159,7.72e-21,14;CL:0000622,1.88e-15,5;CL:0000154,4.81e-13,6;CL:0000317,2.99e-10,2;CL:1000448,2.99e-10,2;CL:0002308,2.99e-10,2;CL:0002140,2.99e-10,2;CL:0000150,5.20e-09,9;CL:0002077,8.54e-09,34;CL:0002623,1.93e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;1.41e-27;6!CL:0000114;1.41e-27;6!UBERON:0004874;1.56e-19;1!UBERON:0000358;3.25e-19;1 | |||
|ontology_enrichment_disease=DOID:3151!3.55e-08!1;DOID:3149!3.55e-08!1;DOID:3112!3.80e-08!1;DOID:178!1.44e-07!1;DOID:326!1.44e-07!1;DOID:3978!1.44e-07!1;DOID:3394!1.44e-07!1;DOID:5844!1.44e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.88e-19;1!DOID:3149;1.88e-19;1!DOID:3112;2.47e-19;1!DOID:3451;2.07e-10;2!DOID:4159;2.07e-10;2!DOID:0060122;2.07e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.88e-19,1;DOID:3149,1.88e-19,1;DOID:3112,2.25e-19,1;DOID:3451,2.07e-10,2;DOID:4159,2.07e-10,2;DOID:0060122,2.07e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001003!9.02e-17!14;UBERON:0007376!9.02e-17!14;UBERON:0007383!9.02e-17!14;UBERON:0008814!6.99e-15!15;UBERON:0002419!4.47e-14!2;UBERON:0007771!4.47e-14!2;UBERON:0003297!4.47e-14!2;UBERON:0001821!4.47e-14!2;UBERON:0003487!4.47e-14!2;UBERON:0001820!4.47e-14!2;UBERON:0005089!4.47e-14!2;UBERON:0005088!4.47e-14!2;UBERON:0002046!4.30e-12!5;UBERON:0004117!4.30e-12!5;UBERON:0007689!4.30e-12!5;UBERON:0007123!4.30e-12!5;UBERON:0003091!4.30e-12!5;UBERON:0003102!8.55e-11!95;UBERON:0001723!1.11e-09!3;UBERON:0001033!1.11e-09!3;UBERON:0010056!1.11e-09!3;UBERON:0009722!1.99e-09!11;UBERON:0007690!1.99e-09!11;UBERON:0002530!3.45e-09!59;UBERON:0007029!2.70e-08!1;UBERON:0000989!3.32e-08!1;UBERON:0008811!3.32e-08!1;UBERON:0006258!3.32e-08!1;UBERON:0005876!3.32e-08!1;UBERON:0004874!3.32e-08!1;UBERON:0000014!8.25e-08!4;UBERON:0000166!1.39e-07!21;UBERON:0002097!2.21e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;4.71e-30;15!UBERON:0007376;4.71e-30;15!UBERON:0007029;8.95e-20;1!UBERON:0000989;1.56e-19;1!UBERON:0008811;1.56e-19;1!UBERON:0000014;2.98e-19;4!UBERON:0002199;1.24e-15;46!UBERON:0002416;1.24e-15;46!UBERON:0010371;4.18e-14;31!UBERON:0002097;3.53e-13;41!UBERON:0002419;3.27e-10;2!UBERON:0007771;3.27e-10;2!UBERON:0003297;3.27e-10;2!UBERON:0001821;3.27e-10;2!UBERON:0003487;3.27e-10;2!UBERON:0001820;3.27e-10;2!UBERON:0003102;2.40e-09;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001003,4.57e-30,15;UBERON:0007376,4.57e-30,15;UBERON:0007383,4.57e-30,15;UBERON:0007029,8.95e-20,1;UBERON:0000989,1.56e-19,1;UBERON:0008811,1.56e-19,1;UBERON:0006258,1.56e-19,1;UBERON:0005876,1.56e-19,1;UBERON:0004874,1.56e-19,1;UBERON:0000014,2.98e-19,4;UBERON:0002097,9.94e-16,41;UBERON:0002199,5.20e-14,46;UBERON:0002416,5.20e-14,46;UBERON:0002419,2.99e-10,2;UBERON:0007771,2.99e-10,2;UBERON:0003297,2.99e-10,2;UBERON:0001821,2.99e-10,2;UBERON:0003487,2.99e-10,2;UBERON:0001820,2.99e-10,2;UBERON:0005089,2.99e-10,2;UBERON:0005088,2.99e-10,2;UBERON:0003102,1.23e-08,99 | |||
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|short_description=p1@LCE6A | |||
}} | }} |
Latest revision as of 03:53, 17 September 2015
Short description: | p1@LCE6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LCE6A_5end |
Coexpression cluster: | C208_skin_amniotic_papillotubular_salivary_umbilical_Alveolar_serous |
Association with transcript: | 0bp_to_NM_001128600, uc001fas.3_5end |
EntrezGene: | LCE6A |
HGNC: | 31824 |
UniProt: | A0A183 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
keratinocyte | 6.67e-33 | 5 |
epidermal cell | 3.93e-32 | 9 |
stratified squamous epithelial cell | 1.47e-27 | 6 |
keratin accumulating cell | 1.47e-27 | 6 |
stratified epithelial cell | 1.47e-27 | 6 |
keratinizing barrier epithelial cell | 1.47e-27 | 6 |
epithelial fate stem cell | 1.47e-27 | 6 |
stratified epithelial stem cell | 1.47e-27 | 6 |
surface ectodermal cell | 1.47e-27 | 6 |
general ecto-epithelial cell | 7.72e-21 | 14 |
acinar cell | 1.88e-15 | 5 |
protein secreting cell | 4.81e-13 | 6 |
sebum secreting cell | 2.99e-10 | 2 |
epithelial cell of sweat gland | 2.99e-10 | 2 |
epithelial cell of skin gland | 2.99e-10 | 2 |
acinar cell of sebaceous gland | 2.99e-10 | 2 |
glandular epithelial cell | 5.20e-09 | 9 |
ecto-epithelial cell | 8.54e-09 | 34 |
acinar cell of salivary gland | 1.93e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
skin epidermis | 4.57e-30 | 15 |
outer epithelium | 4.57e-30 | 15 |
enveloping layer of ectoderm | 4.57e-30 | 15 |
surface | 8.95e-20 | 1 |
penis | 1.56e-19 | 1 |
intromittent organ | 1.56e-19 | 1 |
lateral plate mesenchyme | 1.56e-19 | 1 |
undifferentiated genital tubercle | 1.56e-19 | 1 |
somatopleure | 1.56e-19 | 1 |
zone of skin | 2.98e-19 | 4 |
skin of body | 9.94e-16 | 41 |
integument | 5.20e-14 | 46 |
integumental system | 5.20e-14 | 46 |
skin gland | 2.99e-10 | 2 |
epidermis gland | 2.99e-10 | 2 |
gland of integumental system | 2.99e-10 | 2 |
sebaceous gland | 2.99e-10 | 2 |
skin sebaceous gland | 2.99e-10 | 2 |
sweat gland | 2.99e-10 | 2 |
sweat gland placode | 2.99e-10 | 2 |
sebaceous gland placode | 2.99e-10 | 2 |
surface structure | 1.23e-08 | 99 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.88e-19 | 1 |
keratoacanthoma | 1.88e-19 | 1 |
papillary adenocarcinoma | 2.25e-19 | 1 |
skin carcinoma | 2.07e-10 | 2 |
skin cancer | 2.07e-10 | 2 |
integumentary system cancer | 2.07e-10 | 2 |