FFCP PHASE1:Hg19::chr20:62669251..62669272,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27655 | |HGNC=27655 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-212bp_to_ENST00000463337_5end | |association_with_transcript=-212bp_to_ENST00000463337_5end | ||
|cluster_id=chr20:62669251..62669272,+ | |||
|coexpression_cluster_id=C4064 | |coexpression_cluster_id=C4064 | ||
|description=CAGE_peak_3_at_LINC00176_5end | |description=CAGE_peak_3_at_LINC00176_5end | ||
|id=chr20:62669251..62669272,+ | |id=chr20:62669251..62669272,+ | ||
|ontology_enrichment_celltype=CL:0002139!2.22e-25!24;CL:0002078!5.31e-24!44;CL:0000115!1.49e-23!35;CL:0000071!1.76e-22!18;CL:0002546!1.76e-22!18;CL:0000213!6.31e-14!57;CL:0000215!6.31e-14!57;CL:0002543!4.02e-11!6;CL:1000413!1.60e-08!9;CL:0000084!2.41e-07!25;CL:0000827!2.41e-07!25;CL:0000080!2.75e-07!6;CL:0000838!3.84e-07!52;CL:0000542!6.44e-07!53;CL:0000051!6.44e-07!53;CL:0002144!8.18e-07!3 | |ontology_enrichment_celltype=CL:0002139!2.22e-25!24;CL:0002078!5.31e-24!44;CL:0000115!1.49e-23!35;CL:0000071!1.76e-22!18;CL:0002546!1.76e-22!18;CL:0000213!6.31e-14!57;CL:0000215!6.31e-14!57;CL:0002543!4.02e-11!6;CL:1000413!1.60e-08!9;CL:0000084!2.41e-07!25;CL:0000827!2.41e-07!25;CL:0000080!2.75e-07!6;CL:0000838!3.84e-07!52;CL:0000542!6.44e-07!53;CL:0000051!6.44e-07!53;CL:0002144!8.18e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.13e-25;24!CL:0000071;3.92e-24;18!CL:0002543;4.64e-19;6!CL:0000115;2.28e-16;36!CL:0002144;2.59e-15;3!CL:0002618;1.89e-14;3!CL:0002078;2.88e-11;45!CL:0000213;3.88e-08;58!CL:0000215;3.88e-08;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.66e-25,24;CL:0000071,4.40e-24,18;CL:0002546,4.40e-24,18;CL:0000115,1.98e-22,36;CL:0002543,3.66e-19,6;CL:0002078,2.49e-17,45;CL:0002144,1.73e-15,3;CL:0002618,3.26e-14,3;CL:0000213,9.11e-13,58;CL:0000215,9.11e-13,58;CL:0000838,6.10e-09,52;CL:0000542,9.87e-09,53;CL:0000051,9.87e-09,53 | |||
|ontology_enrichment_development_v019=CL:0002546;3.92e-24;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.76e-22!18;UBERON:0004638!1.76e-22!18;UBERON:0004852!1.76e-22!18;UBERON:0000487!7.83e-20!22;UBERON:0006914!6.97e-19!25;UBERON:0003915!1.60e-08!9;UBERON:0004700!1.60e-08!9;UBERON:0001917!1.60e-08!9;UBERON:0001638!4.65e-07!9;UBERON:0003920!4.65e-07!9;UBERON:0004582!4.65e-07!9;UBERON:0001915!8.18e-07!3;UBERON:0001982!8.18e-07!3 | |ontology_enrichment_uberon=UBERON:0001986!1.76e-22!18;UBERON:0004638!1.76e-22!18;UBERON:0004852!1.76e-22!18;UBERON:0000487!7.83e-20!22;UBERON:0006914!6.97e-19!25;UBERON:0003915!1.60e-08!9;UBERON:0004700!1.60e-08!9;UBERON:0001917!1.60e-08!9;UBERON:0001638!4.65e-07!9;UBERON:0003920!4.65e-07!9;UBERON:0004582!4.65e-07!9;UBERON:0001915!8.18e-07!3;UBERON:0001982!8.18e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.92e-24;18!UBERON:0001986;3.92e-24;18!UBERON:0004852;3.92e-24;18!UBERON:0000487;2.11e-19;22!UBERON:0006914;7.55e-17;25!UBERON:0010523;2.59e-15;3!UBERON:0001915;2.59e-15;3!UBERON:0001982;2.59e-15;3!UBERON:0001638;1.22e-12;9!UBERON:0003920;1.22e-12;9!UBERON:0004582;1.22e-12;9!UBERON:0000490;1.00e-10;33!UBERON:0002066;7.28e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,4.40e-24,18;UBERON:0001986,4.40e-24,18;UBERON:0004852,4.40e-24,18;UBERON:0000487,2.31e-19,22;UBERON:0006914,8.19e-17,25;UBERON:0010523,1.73e-15,3;UBERON:0001915,1.73e-15,3;UBERON:0001982,1.73e-15,3;UBERON:0001638,1.05e-12,9;UBERON:0003920,1.05e-12,9;UBERON:0004582,1.05e-12,9;UBERON:0000055,6.88e-09,68;UBERON:0002066,1.00e-08,5;UBERON:0004535,1.46e-07,109;UBERON:0007500,1.81e-07,59;UBERON:0001981,1.81e-07,59;UBERON:0004537,1.81e-07,59;UBERON:0006965,1.81e-07,59;UBERON:0002049,2.04e-07,78;UBERON:0007798,2.04e-07,78;UBERON:0001009,2.85e-07,112 | |||
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| ||
|short_description=p3@LINC00176 | |short_description=p3@LINC00176 | ||
}} | }} |
Latest revision as of 15:07, 17 September 2015
Short description: | p3@LINC00176 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LINC00176_5end |
Coexpression cluster: | C4064_hairy_b_small_cord_breast_adult_mycosis |
Association with transcript: | -212bp_to_ENST00000463337_5end |
EntrezGene: | NA |
HGNC: | 27655 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.66e-25 | 24 |
blood vessel endothelial cell | 4.40e-24 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.40e-24 | 18 |
endothelial cell | 1.98e-22 | 36 |
vein endothelial cell | 3.66e-19 | 6 |
meso-epithelial cell | 2.49e-17 | 45 |
capillary endothelial cell | 1.73e-15 | 3 |
endothelial cell of umbilical vein | 3.26e-14 | 3 |
lining cell | 9.11e-13 | 58 |
barrier cell | 9.11e-13 | 58 |
lymphoid lineage restricted progenitor cell | 6.10e-09 | 52 |
lymphocyte | 9.87e-09 | 53 |
common lymphoid progenitor | 9.87e-09 | 53 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 4.40e-24 | 18 |
endothelium | 4.40e-24 | 18 |
cardiovascular system endothelium | 4.40e-24 | 18 |
simple squamous epithelium | 2.31e-19 | 22 |
squamous epithelium | 8.19e-17 | 25 |
microcirculatory vessel | 1.73e-15 | 3 |
endothelium of capillary | 1.73e-15 | 3 |
capillary | 1.73e-15 | 3 |
vein | 1.05e-12 | 9 |
venous blood vessel | 1.05e-12 | 9 |
venous system | 1.05e-12 | 9 |
vessel | 6.88e-09 | 68 |
umbilical vein | 1.00e-08 | 5 |
cardiovascular system | 1.46e-07 | 109 |
epithelial tube open at both ends | 1.81e-07 | 59 |
blood vessel | 1.81e-07 | 59 |
blood vasculature | 1.81e-07 | 59 |
vascular cord | 1.81e-07 | 59 |
vasculature | 2.04e-07 | 78 |
vascular system | 2.04e-07 | 78 |
circulatory system | 2.85e-07 | 112 |