FFCP PHASE1:Hg19::chr6:30640823..30640836,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8449 | |EntrezGene=8449 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2739 | |HGNC=2739 | ||
|TSSclassifier=strong | |||
|UniProt=B4DZ28,O60231,Q5SQH4 | |UniProt=B4DZ28,O60231,Q5SQH4 | ||
|association_with_transcript=0bp_to_NM_001164239,NM_003587,uc003nqz.2,uc011dmo.1_5end | |association_with_transcript=0bp_to_NM_001164239,NM_003587,uc003nqz.2,uc011dmo.1_5end | ||
|cluster_id=chr6:30640823..30640836,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_2_at_DHX16_5end | |description=CAGE_peak_2_at_DHX16_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002577;7.26e-08;3 | |ontology_enrichment_celltype_v019=CL:0002577;7.26e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.26e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0000358;3.12e-21;1!UBERON:0009117;4.75e-09;10!UBERON:0005564;4.75e-09;10 | |ontology_enrichment_development_v019=UBERON:0000358;3.12e-21;1!UBERON:0009117;4.75e-09;10!UBERON:0005564;4.75e-09;10 | ||
|ontology_enrichment_disease=DOID:162!1.06e-08!235;DOID:14566!2.21e-08!239;DOID:305!4.72e-08!106;DOID:0050687!1.08e-07!143 | |ontology_enrichment_disease=DOID:162!1.06e-08!235;DOID:14566!2.21e-08!239;DOID:305!4.72e-08!106;DOID:0050687!1.08e-07!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001905;2.60e-11;2!UBERON:0002757;2.60e-11;2!UBERON:0010134;2.60e-11;2!UBERON:0005408;2.60e-11;2!UBERON:0001899;2.60e-11;2!UBERON:0002702;3.70e-11;2!UBERON:0000473;4.43e-11;8!UBERON:0003135;2.62e-08;11!UBERON:0001870;7.26e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0001905;2.60e-11;2!UBERON:0002757;2.60e-11;2!UBERON:0010134;2.60e-11;2!UBERON:0005408;2.60e-11;2!UBERON:0001899;2.60e-11;2!UBERON:0002702;3.70e-11;2!UBERON:0000473;4.43e-11;8!UBERON:0003135;2.62e-08;11!UBERON:0001870;7.26e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.73e-11,2;UBERON:0002757,2.73e-11,2;UBERON:0010134,2.73e-11,2;UBERON:0005408,2.73e-11,2;UBERON:0001899,2.73e-11,2;UBERON:0002702,3.35e-11,2;UBERON:0000473,4.43e-11,8;UBERON:0003135,2.62e-08,11;UBERON:0001870,6.78e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0.369754010166788,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,1.94826728407911,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0.113309342697566,0,0.34362744548263,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0.144824403882799,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.189069634328136,0,0,3.33996642519167,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0.337834441449967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.468642863667593,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0,0,0.10075209822764,0.169560592310488,0.193260853163297,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0.354920400119532,0.505754070234305,0.964044119533928,0.330881918197182,0.217879444092406,0.949082476444386,0,0.196221465125346,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.185176890317059,0.325808305310325,0,0,0.115930404975077,0,0.144366447761074,0,0,0.790204397959275,0,0.246217006087397,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0,0,0.87192013766656,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0.184161977871793,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.178064071293475,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0,0.75894634753143,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0.318852545457645,0.199579371432817,0,0,0,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.36408156524854,0,0,0,0,0,0,0.281338832821026,0,0.329607748453519,0,0,0,0.251932747854276,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0.174919999992391,0.724999575434793,0.227586896570999,0,0,0,0.583209226766509,0,0,0.482385754501632,0,0.331737779793674,0.591095237907095,0.219385397153973,0.435753854075961,0,0,0,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0.451191321234361,0,0,0,0.317873157960757,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.202203398942031,0,0,0.182454789215666,0,0,0,0,0,0.189559738885464,0.450970258243478,0.414752765588989,0,0,0,0,0.284609546029793,0.277349346026277,0,0.195984794828755,0.34823682632161,0.17472666824203,0.171986032471617,0.19351266257817,0.219267951258557,0.0821154570532092,0,0.0882561266915003,0.225980740780532,0,0,0.189932387867636,0.195551382734803,0.320635281006135,0,0.19980960958213,0.288180834308212,0.114536596165916,0,0.432164393964449,0,0.471388069233591,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0.0671834724867263,0,0,0.236349546921671,0.329663433524666,0.0674035438541849,0.196854963029498,0.0846733320657845,0,0.136203406111576,0.321506296930038,0.275078873194468,0,0,0,0.303747783290123,0,0.236417121897595,0.367182116944987,0.211200673038813,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,0.106787412567695,0.471612915298998,0,0,0,0.121792598380896,0.638341257770182,0,0,0.306345576763462,0,0.157054096250234,1.77213635993397,0.366078794705889,0,0,0.332787154610557,0.434674820589684,0,0,0.151649117541648,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.155262956876259,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0.464033759878494,0.398095888698616,0,0,0,0,0.192619830407303,0,0.260994291965212,0.453411851024545,0,0,0.179088841081487,0.617602894321944,0,0,0,0,0.512483037175893,0.345430341731199,0.303859956177382,0.138258436151731,0.194860308839388,0.265729680626726,0.163565394255844,0,0.245772908753719,0,0.19998739585493,0,0,0,0,0,0,0.255788742607303,0,0,0.436838552768056,1.18812770967818,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.615349092722265,0,0.276629009856872,0.161475645631851,0,0.0981477185010256,0,0,0,0,0.690359926060101,0,0.225630985047772,0.20170506870352,0,0,0,0.147856086217045,0.202612753855184,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,2.14280734351315,0,0,0.227662191351298,0.0887023701626388,0.115233987555779,0,0.203909198930495,0.0657727735628491,0.118193840883968,0.111231401892069,0,0.157115589916002,0.840816489941367,0,0,0,0.285906176706625,0.316027223465453,0,0.347716544605159,0,0,0,0,0,0,0.255640214277473,0.423387050190929,0,0,0,0.335566295393377,0,0,0.647428837187895,0,0,0,0.233939463462106,0.198950775161368,0.594600453887843,0,0.109940516745429,0.150962843566674,0,0.218559560503957,0,0,0,0,0.594092800654172,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0.199882311849858,0.178553938605658,0,1.12337913364836,0,0,0,0.315543124386369,0.135982980381829,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0.26721740526556,0.0918948995348449,0.752122617877125,4.54672189309436,16.6137760696831,0,0.103432995861895,0,0,0.129177819672012,0.124149428591716,0,0.12729431655633,0.404234377916439,0,0,0.134704106029175,0,0,0.0814032686109745,0.320182037633146,0,0,2.34640942403454,0.366724332548599,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0,0,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0.369754010166788,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,1.94826728407911,0,0,0.221533894583621,0,0.128091319725675,0,0,0,0,0,0.267540828089713,0,0.113309342697566,0,0.34362744548263,0,0.318565414324097,0,0,0,0.255973222308837,0,0,0,0.201606743224732,0,0.144824403882799,0,0.670700859703636,0,0,0,0.144846518960824,0,0,0.189069634328136,0,0,3.33996642519167,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0.337834441449967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.468642863667593,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0,0,0.10075209822764,0.169560592310488,0.193260853163297,0,0,0.243947412259191,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0.464367928031979,0,0.354920400119532,0.505754070234305,0.964044119533928,0.330881918197182,0.217879444092406,0.949082476444386,0,0.196221465125346,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0.185176890317059,0.325808305310325,0,0,0.115930404975077,0,0.144366447761074,0,0,0.790204397959275,0,0.246217006087397,0,0,0,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0,0,0.87192013766656,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0,0,0,0.215627574859517,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0.153461973288062,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,0,0,0.184161977871793,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0.178064071293475,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0.31481234683064,0,0.308033580176089,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.117812402345686,0,0,0.421258456238981,0,0,0,0.136499911407986,0,0,0.551365343546124,0,0.438450885253763,0.578775534266688,0.655894752046633,0.202910376962704,0,0,0,0.0982490410131212,0,0,0,0,0.75894634753143,0,0.0962221127255121,0.670302275535787,0,0,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0.245040215981032,0,0,0,0.318852545457645,0.199579371432817,0,0,0,0,0,0.313359791546046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.36408156524854,0,0,0,0,0,0,0.281338832821026,0,0.329607748453519,0,0,0,0.251932747854276,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0.174919999992391,0.724999575434793,0.227586896570999,0,0,0,0.583209226766509,0,0,0.482385754501632,0,0.331737779793674,0.591095237907095,0.219385397153973,0.435753854075961,0,0,0,0.23056390438806,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0.451191321234361,0,0,0,0.317873157960757,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0.123563938946503,0,0.202203398942031,0,0,0.182454789215666,0,0,0,0,0,0.189559738885464,0.450970258243478,0.414752765588989,0,0,0,0,0.284609546029793,0.277349346026277,0,0.195984794828755,0.34823682632161,0.17472666824203,0.171986032471617,0.19351266257817,0.219267951258557,0.0821154570532092,0,0.0882561266915003,0.225980740780532,0,0,0.189932387867636,0.195551382734803,0.320635281006135,0,0.19980960958213,0.288180834308212,0.114536596165916,0,0.432164393964449,0,0.471388069233591,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0.0671834724867263,0,0,0.236349546921671,0.329663433524666,0.0674035438541849,0.196854963029498,0.0846733320657845,0,0.136203406111576,0.321506296930038,0.275078873194468,0,0,0,0.303747783290123,0,0.236417121897595,0.367182116944987,0.211200673038813,0,0.191915197319445,0,0,0.25426853765475,0,0,0,0,0.082092520749339,0,0,0,0,0.129282956361551,0.13223260174269,0.171086837884329,0,0.106787412567695,0.471612915298998,0,0,0,0.121792598380896,0.638341257770182,0,0,0.306345576763462,0,0.157054096250234,1.77213635993397,0.366078794705889,0,0,0.332787154610557,0.434674820589684,0,0,0.151649117541648,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0.159296767163702,0,0.155262956876259,0.414706207840855,0,0.521745061811734,0,0,0,0,0,0.464033759878494,0.398095888698616,0,0,0,0,0.192619830407303,0,0.260994291965212,0.453411851024545,0,0,0.179088841081487,0.617602894321944,0,0,0,0,0.512483037175893,0.345430341731199,0.303859956177382,0.138258436151731,0.194860308839388,0.265729680626726,0.163565394255844,0,0.245772908753719,0,0.19998739585493,0,0,0,0,0,0,0.255788742607303,0,0,0.436838552768056,1.18812770967818,0,0,0,0,0,0,0,0,0.128458450192919,0,0.319267718114302,0.615349092722265,0,0.276629009856872,0.161475645631851,0,0.0981477185010256,0,0,0,0,0.690359926060101,0,0.225630985047772,0.20170506870352,0,0,0,0.147856086217045,0.202612753855184,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,2.14280734351315,0,0,0.227662191351298,0.0887023701626388,0.115233987555779,0,0.203909198930495,0.0657727735628491,0.118193840883968,0.111231401892069,0,0.157115589916002,0.840816489941367,0,0,0,0.285906176706625,0.316027223465453,0,0.347716544605159,0,0,0,0,0,0,0.255640214277473,0.423387050190929,0,0,0,0.335566295393377,0,0,0.647428837187895,0,0,0,0.233939463462106,0.198950775161368,0.594600453887843,0,0.109940516745429,0.150962843566674,0,0.218559560503957,0,0,0,0,0.594092800654172,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0.199882311849858,0.178553938605658,0,1.12337913364836,0,0,0,0.315543124386369,0.135982980381829,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0.26721740526556,0.0918948995348449,0.752122617877125,4.54672189309436,16.6137760696831,0,0.103432995861895,0,0,0.129177819672012,0.124149428591716,0,0.12729431655633,0.404234377916439,0,0,0.134704106029175,0,0,0.0814032686109745,0.320182037633146,0,0,2.34640942403454,0.366724332548599,0,0,0,0 | ||
|short_description=p2@DHX16 | |short_description=p2@DHX16 | ||
}} | }} |
Latest revision as of 17:27, 17 September 2015
Short description: | p2@DHX16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DHX16_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_NM_001164239, NM_003587, uc003nqz.2, uc011dmo.1_5end |
EntrezGene: | DHX16 |
HGNC: | 2739 |
UniProt: | B4DZ28O60231Q5SQH4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.73e-11 | 2 |
regional part of epithalamus | 2.73e-11 | 2 |
secretory circumventricular organ | 2.73e-11 | 2 |
circumventricular organ | 2.73e-11 | 2 |
epithalamus | 2.73e-11 | 2 |
middle frontal gyrus | 3.35e-11 | 2 |
testis | 4.43e-11 | 8 |
male reproductive organ | 2.62e-08 | 11 |
frontal cortex | 6.78e-08 | 3 |