FFCP PHASE1:Hg19::chr1:37499986..37499997,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2899 | |EntrezGene=2899 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4581 | |HGNC=4581 | ||
|TSSclassifier=strong | |||
|UniProt=A9Z1Z8,Q13003 | |UniProt=A9Z1Z8,Q13003 | ||
|association_with_transcript=-142bp_to_NM_000831,uc001caz.2,uc001cba.1_5end | |association_with_transcript=-142bp_to_NM_000831,uc001caz.2,uc001cba.1_5end | ||
|cluster_id=chr1:37499986..37499997,- | |||
|description=CAGE_peak_4_at_GRIK3_5end | |description=CAGE_peak_4_at_GRIK3_5end | ||
|id=chr1:37499986..37499997,- | |id=chr1:37499986..37499997,- | ||
|ontology_enrichment_celltype=CL:0000242!5.23e-07!2 | |ontology_enrichment_celltype=CL:0000242!5.23e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.48e-12;2!CL:0000123;2.45e-12;2!CL:0000242;2.45e-12;2 | |ontology_enrichment_celltype_v019=CL:0000047;1.48e-12;2!CL:0000123;2.45e-12;2!CL:0000242;2.45e-12;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,2.59e-12,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:5409!5.03e-07!4 | |ontology_enrichment_disease=DOID:5409!5.03e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:3193;2.45e-12;2!DOID:962;2.45e-12;2!DOID:171;8.83e-10;10!DOID:3095;1.14e-09;22!DOID:2994;1.14e-09;22!DOID:1192;1.17e-08;3 | |ontology_enrichment_disease_v019=DOID:3193;2.45e-12;2!DOID:962;2.45e-12;2!DOID:171;8.83e-10;10!DOID:3095;1.14e-09;22!DOID:2994;1.14e-09;22!DOID:1192;1.17e-08;3 | ||
|ontology_enrichment_disease_v019_2=DOID:3193,1.85e-12,2;DOID:962,1.85e-12,2;DOID:171,8.84e-10,10;DOID:3095,1.27e-09,22;DOID:2994,1.27e-09,22;DOID:1192,9.66e-09,3 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002581;2.93e-23;1!UBERON:0002022;2.93e-23;1!UBERON:0001872;1.48e-18;5!UBERON:0003714;2.45e-12;2!UBERON:0001950;4.24e-10;20!UBERON:0002619;2.82e-09;22!UBERON:0000956;2.82e-08;25!UBERON:0000203;2.82e-08;25!UBERON:0001052;8.37e-07;4!UBERON:0002346;8.37e-07;4!UBERON:0000923;8.37e-07;4!UBERON:0010316;8.37e-07;4!UBERON:0005291;8.37e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002581;2.93e-23;1!UBERON:0002022;2.93e-23;1!UBERON:0001872;1.48e-18;5!UBERON:0003714;2.45e-12;2!UBERON:0001950;4.24e-10;20!UBERON:0002619;2.82e-09;22!UBERON:0000956;2.82e-08;25!UBERON:0000203;2.82e-08;25!UBERON:0001052;8.37e-07;4!UBERON:0002346;8.37e-07;4!UBERON:0000923;8.37e-07;4!UBERON:0010316;8.37e-07;4!UBERON:0005291;8.37e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002581,2.62e-23,1;UBERON:0002022,4.10e-23,1;UBERON:0001872,1.24e-18,5;UBERON:0003714,1.85e-12,2;UBERON:0001950,4.17e-10,20;UBERON:0002619,2.78e-09,22;UBERON:0000956,2.79e-08,25;UBERON:0000203,2.79e-08,25;UBERON:0001052,6.87e-07,4 | |||
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| ||
|short_description=p4@GRIK3 | |short_description=p4@GRIK3 | ||
}} | }} |
Latest revision as of 21:37, 17 September 2015
Short description: | p4@GRIK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GRIK3_5end |
Coexpression cluster: | NA |
Association with transcript: | -142bp_to_NM_000831, uc001caz.2, uc001cba.1_5end |
EntrezGene: | GRIK3 |
HGNC: | 4581 |
UniProt: | A9Z1Z8Q13003 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 2.59e-12 | 2 |
Ontology term | p-value | n |
---|---|---|
postcentral gyrus | 2.62e-23 | 1 |
insula | 4.10e-23 | 1 |
parietal lobe | 1.24e-18 | 5 |
neural tissue | 1.85e-12 | 2 |
neocortex | 4.17e-10 | 20 |
regional part of cerebral cortex | 2.78e-09 | 22 |
cerebral cortex | 2.79e-08 | 25 |
pallium | 2.79e-08 | 25 |
rectum | 6.87e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 1.85e-12 | 2 |
neurofibroma | 1.85e-12 | 2 |
neuroectodermal tumor | 8.84e-10 | 10 |
germ cell and embryonal cancer | 1.27e-09 | 22 |
germ cell cancer | 1.27e-09 | 22 |
peripheral nervous system neoplasm | 9.66e-09 | 3 |