FFCP PHASE1:Hg19::chr6:32152003..32152016,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=177 | |EntrezGene=177 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=320 | |HGNC=320 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SSZ2,Q3L1R4,Q3L1R7,Q5SSZ3,Q3L1R2 | |UniProt=Q5SSZ2,Q3L1R4,Q3L1R7,Q5SSZ3,Q3L1R2 | ||
|association_with_transcript=0bp_to_ENST00000375056,ENST00000375065,ENST00000375067,ENST00000438221,ENST00000450110,ENST00000546237,uc003oar.2,uc011dpm.1,uc011dpn.1_5end | |association_with_transcript=0bp_to_ENST00000375056,ENST00000375065,ENST00000375067,ENST00000438221,ENST00000450110,ENST00000546237,uc003oar.2,uc011dpm.1,uc011dpn.1_5end | ||
|cluster_id=chr6:32152003..32152016,- | |||
|coexpression_cluster_id=C308 | |coexpression_cluster_id=C308 | ||
|description=CAGE_peak_2_at_AGER_5end | |description=CAGE_peak_2_at_AGER_5end | ||
|id=chr6:32152003..32152016,- | |id=chr6:32152003..32152016,- | ||
|ontology_enrichment_celltype=CL:0002536;2.86e-25;2!CL:0000349;6.02e-23;19!CL:0002537;6.97e-11;5 | |ontology_enrichment_celltype=CL:0000039!1.56e-20!7;CL:0000586!1.56e-20!7;CL:0002541!2.74e-13!3;CL:0002536!9.14e-10!2;CL:0000349!9.10e-07!3;CL:0002577!9.10e-07!3 | ||
| | |ontology_enrichment_celltype_v019=CL:0002536;2.86e-25;2!CL:0000349;6.02e-23;19!CL:0002537;6.97e-11;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002536,2.69e-25,2;CL:0000349,5.68e-23,19;CL:0002537,6.80e-11,5 | |||
|ontology_enrichment_development_v019=UBERON:0007123;7.14e-11;5 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0005631;1.59e-30;10!UBERON:0000158;1.59e-30;10!UBERON:0000305;2.84e-28;7!UBERON:0000478;4.03e-18;24!UBERON:0002171;3.50e-14;1!UBERON:0006518;3.50e-14;1!UBERON:0008949;3.50e-14;1!UBERON:0000101;3.50e-14;1!UBERON:0002167;3.50e-14;1!UBERON:0002046;7.14e-11;5 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!6.43e-29!14;UBERON:0000158!6.43e-29!14;UBERON:0003124!2.10e-21!7;UBERON:0000478!5.05e-16!24;UBERON:0000476!2.74e-13!3;UBERON:0000920!2.74e-13!3;UBERON:0000305!2.77e-10!7;UBERON:0001987!2.86e-10!4;UBERON:0004340!2.86e-10!4;UBERON:0004923!1.00e-09!57;UBERON:0004871!5.33e-09!8;UBERON:0002046!2.89e-08!5;UBERON:0004117!2.89e-08!5;UBERON:0007689!2.89e-08!5;UBERON:0007123!2.89e-08!5;UBERON:0003091!2.89e-08!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.59e-30;10!UBERON:0000158;1.59e-30;10!UBERON:0000305;2.84e-28;7!UBERON:0000478;4.03e-18;24!UBERON:0002171;3.50e-14;1!UBERON:0006518;3.50e-14;1!UBERON:0008949;3.50e-14;1!UBERON:0000101;3.50e-14;1!UBERON:0002167;3.50e-14;1!UBERON:0002046;7.14e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.09e-31,14;UBERON:0000158,3.09e-31,14;UBERON:0000305,2.65e-28,7;UBERON:0004871,8.08e-25,8;UBERON:0000478,3.85e-18,24;UBERON:0002171,3.50e-14,1;UBERON:0006518,3.50e-14,1;UBERON:0008949,3.50e-14,1;UBERON:0000101,3.50e-14,1;UBERON:0002167,3.50e-14,1;UBERON:0002046,7.14e-11,5;UBERON:0004117,7.14e-11,5;UBERON:0007689,7.14e-11,5;UBERON:0007123,7.14e-11,5;UBERON:0003091,7.14e-11,5;UBERON:0003124,5.28e-08,7 | |||
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| ||
|short_description=p2@AGER | |short_description=p2@AGER | ||
}} | }} |
Latest revision as of 02:07, 18 September 2015
Short description: | p2@AGER |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_AGER_5end |
Coexpression cluster: | C308_lung_Hepatocyte_liver_thyroid_heart_left_breast |
Association with transcript: | 0bp_to_ENST00000375056, ENST00000375065, ENST00000375067, ENST00000438221, ENST00000450110, ENST00000546237, uc003oar.2, uc011dpm.1, uc011dpn.1_5end |
EntrezGene: | AGER |
HGNC: | 320 |
UniProt: | Q5SSZ2Q3L1R4Q3L1R7Q5SSZ3Q3L1R2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amniotic epithelial cell | 2.69e-25 | 2 |
extraembryonic cell | 5.68e-23 | 19 |
amnion mesenchymal stem cell | 6.80e-11 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.09e-31 | 14 |
membranous layer | 3.09e-31 | 14 |
amnion | 2.65e-28 | 7 |
somatic layer of lateral plate mesoderm | 8.08e-25 | 8 |
extraembryonic structure | 3.85e-18 | 24 |
lower lobe of right lung | 3.50e-14 | 1 |
right lung lobe | 3.50e-14 | 1 |
lower lobe of lung | 3.50e-14 | 1 |
lobe of lung | 3.50e-14 | 1 |
right lung | 3.50e-14 | 1 |
thyroid gland | 7.14e-11 | 5 |
pharyngeal pouch | 7.14e-11 | 5 |
thyroid diverticulum | 7.14e-11 | 5 |
pharyngeal pouch 2 | 7.14e-11 | 5 |
thyroid primordium | 7.14e-11 | 5 |
chorion | 5.28e-08 | 7 |