FFCP PHASE1:Hg19::chr5:52084059..52084086,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6134 | |||
|TSSclassifier=strong | |||
|UniProt=P56199 | |||
|association_with_transcript=-49bp_to_NM_181501_5end | |||
|cluster_id=chr5:52084059..52084086,+ | |||
|coexpression_cluster_id=C1277 | |||
|description=CAGE_peak_4_at_ITGA1_5end | |||
|id=chr5:52084059..52084086,+ | |||
|ontology_enrichment_celltype=CL:0000136!8.84e-09!15;CL:0000055!2.62e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000136;2.66e-10;13!CL:0000182;3.89e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.25e-10,15;CL:0000182,4.18e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.73e-14!659;UBERON:0000477!1.83e-13!286;UBERON:0007023!2.61e-13!115;UBERON:0000481!8.31e-13!347;UBERON:0000475!8.18e-12!365;UBERON:0000467!2.42e-11!625;UBERON:0000480!3.85e-11!626;UBERON:0003914!3.25e-10!118;UBERON:0004111!7.61e-10!241;UBERON:0005256!1.22e-09!143;UBERON:0002100!1.64e-09!216;UBERON:0003104!2.02e-09!238;UBERON:0009142!2.02e-09!238;UBERON:0000025!3.30e-09!194;UBERON:0002107!6.08e-09!19;UBERON:0006925!6.08e-09!19;UBERON:0008836!6.08e-09!19;UBERON:0000490!1.74e-08!138;UBERON:0000119!1.92e-08!312;UBERON:0009856!2.14e-08!26;UBERON:0009854!3.95e-08!23;UBERON:0000483!4.21e-08!309;UBERON:0007499!6.28e-08!25;UBERON:0001048!1.07e-07!168;UBERON:0008835!1.18e-07!22;UBERON:0003894!1.18e-07!22;UBERON:0005057!1.36e-07!26;UBERON:0002368!3.19e-07!35;UBERON:0000062!3.81e-07!511;UBERON:0002417!4.55e-07!61;UBERON:0000916!4.55e-07!61;UBERON:0009497!5.52e-07!25;UBERON:0000015!5.52e-07!25;UBERON:0002423!5.52e-07!25;UBERON:0006235!5.52e-07!25;UBERON:0004161!5.52e-07!25;UBERON:0007100!6.65e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.14e-11;19!UBERON:0006925;3.14e-11;19!UBERON:0002368;1.18e-09;33!UBERON:0002423;3.93e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.28e-11,19;UBERON:0006925,3.28e-11,19;UBERON:0008836,3.28e-11,19;UBERON:0005256,3.96e-11,122;UBERON:0002100,4.06e-11,199;UBERON:0003104,7.81e-11,160;UBERON:0009142,7.81e-11,160;UBERON:0007023,2.21e-10,114;UBERON:0002417,6.12e-10,60;UBERON:0000916,6.12e-10,60;UBERON:0003914,6.70e-10,117;UBERON:0009569,7.92e-10,112;UBERON:0009854,1.77e-09,23;UBERON:0002368,3.47e-09,35;UBERON:0008835,7.62e-09,22;UBERON:0003894,7.62e-09,22;UBERON:0009856,8.12e-09,26;UBERON:0001048,9.81e-09,160;UBERON:0007499,3.26e-08,25;UBERON:0009497,4.22e-08,25;UBERON:0000015,4.22e-08,25;UBERON:0002423,4.22e-08,25;UBERON:0006235,4.22e-08,25;UBERON:0004161,4.22e-08,25;UBERON:0004921,6.23e-08,118;UBERON:0000490,1.46e-07,148;UBERON:0001007,1.68e-07,145;UBERON:0001555,1.68e-07,145;UBERON:0007026,1.68e-07,145;UBERON:0005172,5.93e-07,54;UBERON:0005173,5.93e-07,54 | |||
|phase1_expression=13.0808433074801,7.49351833618441,8.3163098416623,15.0109947529696,12.0679495495368,4.36169262050184,7.59899634504932,0.631719873426831,1.30592814099919,0.491467873003018,1.39560233594486,0,0,0,0,2.6893005858071,1.20538905604795,0,0.975865597581014,0,0.204000691244253,0,0.572471974262113,0.410623275218653,1.25542639594803,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0.436194716338694,0,0.242584061187816,0,0,0,0.575384784644301,0,1.18241114944293,0,0,0,0,0,0,0,0.320929027076094,1.27867425159808,0.329851300186716,0,1.27867425159808,0.580418477257168,0,1.86846674698672,0,0,0.868755378820466,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.164437904603676,0.276350017785848,0.289803085735052,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,6.03630773733273,3.70801429346238,0.722878304769133,1.00267582127178,1.30361867064741,0.795285947051099,1.45990461090791,0.567208902984407,0.221729397462564,0.43917392846563,3.1434978119451,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,3.6178346283706,3.5576626268671,6.6944122552934,3.22263453687318,6.84244895146661,3.66093086322254,0,0,0.535798369704479,0.44905874525234,0.112611480483322,0,0,0.366403487860815,0,0,0,3.47880366186723,1.01304409331664,0.264818361626438,0.860509862246441,0.354668382198357,1.68203280042692,2.1349799145941,0.98667019366864,2.8008993185979,2.69421344139376,1.79808093424805,1.81628913173918,0.576175924479999,0,0.624320153660641,0,0.149448680551801,0.23486899728753,0.161872944368132,0.140450806702248,1.02077085627447,0.245668634623536,1.03325781175765,0,2.47266929278557,0,0.718618141816238,0.168336113954066,0.250237039743928,0.554128230968366,0.877955241761676,1.83892677479412,5.10809400282429,1.13432183160021,6.63741652048789,12.813443329114,0.847727604638247,2.10063767259082,1.95799805553034,9.27505944164265,5.3973888336161,2.36286865137773,1.26668106709558,3.5340728394176,3.68199594569197,0.484938170456436,4.26011511019937,4.03008392910561,1.18692414617341,0,0.272746120590835,0,0,0.132529768321485,0,0,0,0,3.12899064659632,4.5026865673502,2.76269842704961,0.464367928031979,0.721879481669586,1.77460200059766,0.168584690078102,2.89213235860178,2.09558548191549,1.52515610864684,1.18635309555548,0.674156540800822,0.98110732562673,1.53898862778556,7.38155454624648,4.20725321410337,0.8231480226628,4.41026134156626,13.9430538304014,30.4676437170064,28.9487054273888,0.441463099414651,0.122988438543114,2.57351715447788,0,0,0,0,0.325808305310325,0,0,0.463721619900307,3.87448690978212,3.17606185074362,0.925971025153221,5.70762456703795,0,0,0,0,0,0,0,0.283550194484773,0.268675568108545,0,0,0,0,0.207328115540772,0,0,0.063497894292169,0.381988425558278,0,0,0.411309970813294,0,0.285826432630578,0.672786506072164,2.1798003441664,0.7333828582095,10.47100897638,3.57656445851882,3.381211010224,7.44626726437637,7.28052058379563,0.257207374262142,0,0,15.8705572960544,3.7983512377401,0.823240336780769,1.95441710576241,14.2156779497018,1.58390374586686,1.80863626235752,2.61460037580088,0.599837947092342,0,0,0,5.03212196532324,4.59447743336456,0,0.723906533337896,1.43833425785268,0.716243852959582,0,0,0,0,0.254094624222463,1.30139853857622,0.773288812777695,0,0.637938751653163,0,0,0,0.736148950314839,0,0,4.15941723061614,0.892144943985809,1.26161932027148,0.35142424497814,0,0,1.03473071292505,0,0,0.60818530127658,0.391602314925481,0.343143423810856,0,0,0,0,0,0,7.44323423456331,9.20771839728375,6.73584226639377,2.17836553734692,13.816095724801,3.86049410744658,0,0.308419387605311,0.710246901252508,0.410635780069046,0,0.464841513839837,0,0,0,1.37777337797528,0.182091168006717,1.04899531967539,0,0.616122696835318,0,1.46139224653261,1.26661954671451,1.13733384070897,1.36074964221213,1.94324324491925,3.08454505380579,0,0.501689773854853,0.254876273045038,0,0,0,0,0.256450125116389,0.328014645699706,0.976135183992909,12.2618803860789,0.366277859273374,0.495056999523528,0,0,0,0.193341436584244,0.462145851343933,0.15350367472613,0.137836572484531,1.07420244868274,0.580066775656914,0.596586391912706,0.356128142586949,0.826424576804891,0.192190067365106,0.765676274967505,0.10115778085555,0,1.88887408098384,0,0.308033580176089,0,1.73986598415015,3.89180860118232,4.00749682877575,5.21021717103534,1.2655176988749,10.2940304718865,0,0.42793898803392,0,0,8.99362287916574,6.03981465419321,4.24124648444471,0.202182481573316,1.58510321173008,0.842516912477962,1.95053495635836,1.70599442741899,1.05650146756755,2.72999822815972,1.41405431953713,1.13008116620243,0,5.30751180192976,3.06915619677634,0.578775534266688,2.62357900818653,4.05820753925408,2.478587984798,0.845086807596724,1.43411352204052,2.84922218938051,2.49669736036875,0.354761064070598,0.633322905892992,0.329294892959902,0,0,0,0,0,12.5211255033116,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,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| |||
|short_description=p4@ITGA1 | |||
}} |
Latest revision as of 02:21, 18 September 2015
Short description: | p4@ITGA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ITGA1_5end |
Coexpression cluster: | C1277_Hepatocyte_mature_mesenchymal_smooth_bladder_normal_cholangiocellular |
Association with transcript: | -49bp_to_NM_181501_5end |
EntrezGene: | ITGA1 |
HGNC: | 6134 |
UniProt: | P56199 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.25e-10 | 15 |
hepatocyte | 4.18e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.28e-11 | 19 |
digestive gland | 3.28e-11 | 19 |
liver bud | 3.28e-11 | 19 |
trunk mesenchyme | 3.96e-11 | 122 |
trunk | 4.06e-11 | 199 |
mesenchyme | 7.81e-11 | 160 |
entire embryonic mesenchyme | 7.81e-11 | 160 |
adult organism | 2.21e-10 | 114 |
abdominal segment of trunk | 6.12e-10 | 60 |
abdomen | 6.12e-10 | 60 |
epithelial tube | 6.70e-10 | 117 |
subdivision of trunk | 7.92e-10 | 112 |
digestive tract diverticulum | 1.77e-09 | 23 |
endocrine gland | 3.47e-09 | 35 |
hepatic diverticulum | 7.62e-09 | 22 |
liver primordium | 7.62e-09 | 22 |
sac | 8.12e-09 | 26 |
primordium | 9.81e-09 | 160 |
epithelial sac | 3.26e-08 | 25 |
epithelium of foregut-midgut junction | 4.22e-08 | 25 |
anatomical boundary | 4.22e-08 | 25 |
hepatobiliary system | 4.22e-08 | 25 |
foregut-midgut junction | 4.22e-08 | 25 |
septum transversum | 4.22e-08 | 25 |
subdivision of digestive tract | 6.23e-08 | 118 |
unilaminar epithelium | 1.46e-07 | 148 |
digestive system | 1.68e-07 | 145 |
digestive tract | 1.68e-07 | 145 |
primitive gut | 1.68e-07 | 145 |
abdomen element | 5.93e-07 | 54 |
abdominal segment element | 5.93e-07 | 54 |