FFCP PHASE1:Hg19::chr19:42931567..42931581,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3991 | |EntrezGene=3991 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6621 | |HGNC=6621 | ||
|TSSclassifier=strong | |||
|UniProt=Q05469 | |UniProt=Q05469 | ||
|association_with_transcript=0bp_to_ENST00000244289,NM_005357,uc002otr.2_5end | |association_with_transcript=0bp_to_ENST00000244289,NM_005357,uc002otr.2_5end | ||
|cluster_id=chr19:42931567..42931581,- | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_4_at_LIPE_5end | |description=CAGE_peak_4_at_LIPE_5end | ||
|id=chr19:42931567..42931581,- | |id=chr19:42931567..42931581,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002535;6.96e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,6.96e-21,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4362;3.49e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,3.49e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000369!1.26e-29!4;UBERON:0002435!1.26e-29!4;UBERON:0000204!1.26e-29!4;UBERON:0010082!1.26e-29!4;UBERON:0005383!6.07e-23!3;UBERON:0005382!6.07e-23!3;UBERON:0009663!4.72e-17!7;UBERON:0002133!4.65e-16!2;UBERON:0001873!5.02e-16!2;UBERON:0010122!5.02e-16!2;UBERON:0002308!2.60e-13!9;UBERON:0002420!2.60e-13!9;UBERON:0000125!2.60e-13!9;UBERON:0007245!2.60e-13!9;UBERON:0010009!2.60e-13!9;UBERON:0010011!2.60e-13!9;UBERON:0000454!2.60e-13!9;UBERON:0007023!1.32e-11!115;UBERON:0003978!5.15e-11!3;UBERON:0009751!5.15e-11!3;UBERON:0000946!5.15e-11!3;UBERON:0002523!5.15e-11!3;UBERON:0005983!5.15e-11!3;UBERON:0002165!5.15e-11!3;UBERON:0002062!5.15e-11!3;UBERON:0007280!5.15e-11!3;UBERON:0000473!3.10e-09!8;UBERON:0002134!5.70e-09!1;UBERON:0005208!5.70e-09!1;UBERON:0005946!5.70e-09!1;UBERON:0005965!5.70e-09!1;UBERON:0002078!5.70e-09!1;UBERON:0002135!8.36e-09!1;UBERON:0001874!1.13e-08!1;UBERON:0002372!1.78e-08!1;UBERON:0001961!1.78e-08!1;UBERON:0001744!1.78e-08!1;UBERON:0001735!1.78e-08!1;UBERON:0001882!1.91e-08!1;UBERON:0005403!1.91e-08!1;UBERON:0003135!7.81e-07!11 | |ontology_enrichment_uberon=UBERON:0000369!1.26e-29!4;UBERON:0002435!1.26e-29!4;UBERON:0000204!1.26e-29!4;UBERON:0010082!1.26e-29!4;UBERON:0005383!6.07e-23!3;UBERON:0005382!6.07e-23!3;UBERON:0009663!4.72e-17!7;UBERON:0002133!4.65e-16!2;UBERON:0001873!5.02e-16!2;UBERON:0010122!5.02e-16!2;UBERON:0002308!2.60e-13!9;UBERON:0002420!2.60e-13!9;UBERON:0000125!2.60e-13!9;UBERON:0007245!2.60e-13!9;UBERON:0010009!2.60e-13!9;UBERON:0010011!2.60e-13!9;UBERON:0000454!2.60e-13!9;UBERON:0007023!1.32e-11!115;UBERON:0003978!5.15e-11!3;UBERON:0009751!5.15e-11!3;UBERON:0000946!5.15e-11!3;UBERON:0002523!5.15e-11!3;UBERON:0005983!5.15e-11!3;UBERON:0002165!5.15e-11!3;UBERON:0002062!5.15e-11!3;UBERON:0007280!5.15e-11!3;UBERON:0000473!3.10e-09!8;UBERON:0002134!5.70e-09!1;UBERON:0005208!5.70e-09!1;UBERON:0005946!5.70e-09!1;UBERON:0005965!5.70e-09!1;UBERON:0002078!5.70e-09!1;UBERON:0002135!8.36e-09!1;UBERON:0001874!1.13e-08!1;UBERON:0002372!1.78e-08!1;UBERON:0001961!1.78e-08!1;UBERON:0001744!1.78e-08!1;UBERON:0001735!1.78e-08!1;UBERON:0001882!1.91e-08!1;UBERON:0005403!1.91e-08!1;UBERON:0003135!7.81e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.64e-21;8!UBERON:0006955;6.96e-21;2!UBERON:0004801;6.96e-21;2!UBERON:0003135;1.62e-15;11!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0000002;7.25e-08;6!UBERON:0001560;7.25e-08;6!UBERON:0003133;7.95e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0006955,6.96e-21,2;UBERON:0004801,6.96e-21,2;UBERON:0003135,1.62e-15,11;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0003133,3.04e-08,48;UBERON:0000002,7.25e-08,6;UBERON:0001560,7.25e-08,6;UBERON:0005156,7.68e-07,59;UBERON:0000990,7.68e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32230949142452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0.604651252380536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2562090462043,0.612691153526923,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,9.32077988084345,13.1302423776527,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.32230949142452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0.604651252380536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2562090462043,0.612691153526923,0.983617892129413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0.157115589916002,0,0.913158720509496,0,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250707539292375,9.32077988084345,13.1302423776527,0,0,0,0,0,0,0,0.0636471582781649,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.603821380773079,0 | ||
|short_description=p4@LIPE | |short_description=p4@LIPE | ||
}} | }} |
Latest revision as of 09:40, 18 September 2015
Short description: | p4@LIPE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LIPE_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000244289, NM_005357, uc002otr.2_5end |
EntrezGene: | LIPE |
HGNC: | 6621 |
UniProt: | Q05469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 6.96e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
uterine epithelium | 6.96e-21 | 2 |
cervix epithelium | 6.96e-21 | 2 |
male reproductive organ | 1.62e-15 | 11 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
reproductive organ | 3.04e-08 | 48 |
uterine cervix | 7.25e-08 | 6 |
neck of organ | 7.25e-08 | 6 |
reproductive structure | 7.68e-07 | 59 |
reproductive system | 7.68e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 3.49e-09 | 5 |