FFCP PHASE1:Hg19::chr2:74741569..74741620,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3196 | |EntrezGene=3196 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5057 | |HGNC=5057 | ||
|TSSclassifier=strong | |||
|UniProt=O43763 | |UniProt=O43763 | ||
|association_with_transcript=0bp_to_ENST00000233638,NM_016170,uc002smb.1_5end | |association_with_transcript=0bp_to_ENST00000233638,NM_016170,uc002smb.1_5end | ||
|cluster_id=chr2:74741569..74741620,+ | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_1_at_TLX2_5end | |description=CAGE_peak_1_at_TLX2_5end | ||
|id=chr2:74741569..74741620,+ | |id=chr2:74741569..74741620,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000243;2.30e-15;15!CL:0000125;2.30e-15;15!CL:0000333;5.69e-15;5!CL:0000095;1.31e-13;17!CL:0002319;3.44e-09;25!CL:0002321;2.84e-07;15!CL:0002573;4.20e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,2.33e-15,15;CL:0000125,2.33e-15,15;CL:0000030,2.33e-15,15;CL:0000339,2.33e-15,15;CL:0000333,1.32e-14,41;CL:0000095,1.33e-13,17;CL:0000123,1.33e-13,17;CL:0000133,1.83e-09,59;CL:0002319,3.47e-09,25;CL:0000221,2.50e-07,72;CL:0002573,4.21e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000339;2.30e-15;15!UBERON:0006238;1.07e-13;10 | |||
|ontology_enrichment_disease=DOID:3093!2.22e-07!11 | |||
|ontology_enrichment_disease_v019=DOID:3093;1.68e-12;11!DOID:169;1.74e-12;6!DOID:171;1.69e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.62e-12,6;DOID:3093,1.70e-12,11;DOID:171,1.62e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!9.54e-22!94;UBERON:0001016!9.54e-22!94;UBERON:0000955!2.08e-18!69;UBERON:0006238!2.08e-18!69;UBERON:0001017!1.51e-17!82;UBERON:0005743!2.91e-17!86;UBERON:0001049!1.48e-15!57;UBERON:0005068!1.48e-15!57;UBERON:0006241!1.48e-15!57;UBERON:0007135!1.48e-15!57;UBERON:0001950!2.88e-15!20;UBERON:0002020!1.75e-14!34;UBERON:0003528!1.75e-14!34;UBERON:0002619!1.73e-13!22;UBERON:0001893!5.00e-13!34;UBERON:0001869!6.26e-13!32;UBERON:0002346!1.25e-12!90;UBERON:0002616!1.38e-12!59;UBERON:0002791!3.66e-12!33;UBERON:0002780!3.83e-12!41;UBERON:0001890!3.83e-12!41;UBERON:0006240!3.83e-12!41;UBERON:0003080!1.07e-11!42;UBERON:0000956!2.37e-11!25;UBERON:0000203!2.37e-11!25;UBERON:0003075!3.09e-11!86;UBERON:0007284!3.09e-11!86;UBERON:0000924!5.44e-11!173;UBERON:0006601!5.44e-11!173;UBERON:0004121!7.02e-10!169;UBERON:0003056!1.72e-09!61;UBERON:0000153!8.12e-09!129;UBERON:0007811!8.12e-09!129;UBERON:0000033!1.34e-08!123;UBERON:0000200!2.32e-08!6;UBERON:0007023!3.77e-08!115;UBERON:0001871!4.15e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000010;6.40e-18;8!UBERON:0000013;5.69e-15;5!UBERON:0002410;5.69e-15;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,5.98e-18,8;UBERON:0000013,5.23e-15,5;UBERON:0002410,5.23e-15,5;UBERON:0001016,1.58e-12,89;UBERON:0000955,1.84e-07,68;UBERON:0006238,1.84e-07,68 | |||
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| ||
|short_description=p1@TLX2 | |short_description=p1@TLX2 | ||
}} | }} |
Latest revision as of 11:38, 18 September 2015
Short description: | p1@TLX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TLX2_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 0bp_to_ENST00000233638, NM_016170, uc002smb.1_5end |
EntrezGene: | TLX2 |
HGNC: | 5057 |
UniProt: | O43763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 2.33e-15 | 15 |
glial cell | 2.33e-15 | 15 |
glioblast | 2.33e-15 | 15 |
glioblast (sensu Vertebrata) | 2.33e-15 | 15 |
migratory neural crest cell | 1.32e-14 | 41 |
neuron associated cell | 1.33e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 1.33e-13 | 17 |
neurectodermal cell | 1.83e-09 | 59 |
neural cell | 3.47e-09 | 25 |
ectodermal cell | 2.50e-07 | 72 |
Schwann cell | 4.21e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 5.98e-18 | 8 |
sympathetic nervous system | 5.23e-15 | 5 |
autonomic nervous system | 5.23e-15 | 5 |
nervous system | 1.58e-12 | 89 |
brain | 1.84e-07 | 68 |
future brain | 1.84e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.62e-12 | 6 |
nervous system cancer | 1.70e-12 | 11 |
neuroectodermal tumor | 1.62e-07 | 10 |