FFCP PHASE1:Hg19::chr6:43139153..43139232,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6722 | |EntrezGene=6722 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11291 | |HGNC=11291 | ||
|TSSclassifier=strong | |||
|UniProt=P11831 | |UniProt=P11831 | ||
|association_with_transcript=116bp_to_ENST00000265354_5end | |association_with_transcript=116bp_to_ENST00000265354_5end | ||
|cluster_id=chr6:43139153..43139232,+ | |||
|description=CAGE_peak_1_at_SRF_5end | |description=CAGE_peak_1_at_SRF_5end | ||
|id=chr6:43139153..43139232,+ | |id=chr6:43139153..43139232,+ | ||
|ontology_enrichment_celltype=CL:0000012!8.11e-14!682;CL:0002321!9.26e-14!248;CL:0000548!1.73e-13!679;CL:0000004!1.73e-13!679;CL:0000255!1.73e-13!679;CL:0000220!5.22e-13!246;CL:0000144!1.80e-11!625;CL:0000055!7.36e-09!180;CL:0002371!1.00e-07!591;CL:0000183!3.12e-07!59;CL:0000222!6.77e-07!119 | |ontology_enrichment_celltype=CL:0000012!8.11e-14!682;CL:0002321!9.26e-14!248;CL:0000548!1.73e-13!679;CL:0000004!1.73e-13!679;CL:0000255!1.73e-13!679;CL:0000220!5.22e-13!246;CL:0000144!1.80e-11!625;CL:0000055!7.36e-09!180;CL:0002371!1.00e-07!591;CL:0000183!3.12e-07!59;CL:0000222!6.77e-07!119 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.15e-13,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!2.72e-07!31 | |ontology_enrichment_disease=DOID:8692!2.72e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;3.25e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.72e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0003914!1.32e-11!118;UBERON:0004872!4.38e-09!84;UBERON:0000490!7.45e-09!138;UBERON:0002049!8.35e-09!79;UBERON:0007798!8.35e-09!79;UBERON:0005256!2.77e-08!143;UBERON:0001981!5.99e-08!60;UBERON:0007500!5.99e-08!60;UBERON:0004537!5.99e-08!60;UBERON:0006965!5.99e-08!60;UBERON:0001009!1.07e-07!113;UBERON:0000055!1.19e-07!69;UBERON:0001048!1.94e-07!168;UBERON:0002385!4.37e-07!63;UBERON:0001015!4.37e-07!63;UBERON:0000383!4.37e-07!63;UBERON:0007100!5.95e-07!27;UBERON:0000486!6.06e-07!82;UBERON:0004535!7.61e-07!110 | |ontology_enrichment_uberon=UBERON:0003914!1.32e-11!118;UBERON:0004872!4.38e-09!84;UBERON:0000490!7.45e-09!138;UBERON:0002049!8.35e-09!79;UBERON:0007798!8.35e-09!79;UBERON:0005256!2.77e-08!143;UBERON:0001981!5.99e-08!60;UBERON:0007500!5.99e-08!60;UBERON:0004537!5.99e-08!60;UBERON:0006965!5.99e-08!60;UBERON:0001009!1.07e-07!113;UBERON:0000055!1.19e-07!69;UBERON:0001048!1.94e-07!168;UBERON:0002385!4.37e-07!63;UBERON:0001015!4.37e-07!63;UBERON:0000383!4.37e-07!63;UBERON:0007100!5.95e-07!27;UBERON:0000486!6.06e-07!82;UBERON:0004535!7.61e-07!110 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,5.88e-12,117;UBERON:0005256,2.36e-09,122;UBERON:0000490,9.56e-09,148;UBERON:0004872,9.77e-09,83;UBERON:0003104,1.45e-08,160;UBERON:0009142,1.45e-08,160;UBERON:0002049,1.87e-08,78;UBERON:0007798,1.87e-08,78;UBERON:0001048,7.53e-08,160;UBERON:0007500,1.38e-07,59;UBERON:0001981,1.38e-07,59;UBERON:0004537,1.38e-07,59;UBERON:0006965,1.38e-07,59;UBERON:0001009,2.11e-07,112;UBERON:0007503,2.24e-07,78;UBERON:0002100,2.41e-07,199;UBERON:0000055,2.62e-07,68;UBERON:0007100,5.95e-07,27;UBERON:0002385,9.68e-07,64;UBERON:0001015,9.68e-07,64;UBERON:0000383,9.68e-07,64 | |||
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| ||
|short_description=p1@SRF | |short_description=p1@SRF | ||
}} | }} |
Latest revision as of 21:39, 18 September 2015
Short description: | p1@SRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SRF_5end |
Coexpression cluster: | NA |
Association with transcript: | 116bp_to_ENST00000265354_5end |
EntrezGene: | SRF |
HGNC: | 11291 |
UniProt: | P11831 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.15e-13 | 250 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 5.88e-12 | 117 |
trunk mesenchyme | 2.36e-09 | 122 |
unilaminar epithelium | 9.56e-09 | 148 |
splanchnic layer of lateral plate mesoderm | 9.77e-09 | 83 |
mesenchyme | 1.45e-08 | 160 |
entire embryonic mesenchyme | 1.45e-08 | 160 |
vasculature | 1.87e-08 | 78 |
vascular system | 1.87e-08 | 78 |
primordium | 7.53e-08 | 160 |
epithelial tube open at both ends | 1.38e-07 | 59 |
blood vessel | 1.38e-07 | 59 |
blood vasculature | 1.38e-07 | 59 |
vascular cord | 1.38e-07 | 59 |
circulatory system | 2.11e-07 | 112 |
epithelial vesicle | 2.24e-07 | 78 |
trunk | 2.41e-07 | 199 |
vessel | 2.62e-07 | 68 |
primary circulatory organ | 5.95e-07 | 27 |
muscle tissue | 9.68e-07 | 64 |
musculature | 9.68e-07 | 64 |
musculature of body | 9.68e-07 | 64 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.72e-07 | 31 |