FFCP PHASE1:Hg19::chr19:48673552..48673578,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3978 | |EntrezGene=3978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6598 | |HGNC=6598 | ||
|TSSclassifier=strong | |||
|UniProt=P18858,F5GZ28,B4E135 | |UniProt=P18858,F5GZ28,B4E135 | ||
|association_with_transcript=0bp_to_ENST00000263274,ENST00000536218,ENST00000542460,NM_000234,uc002pia.1,uc002pib.1,uc010xzf.1,uc010xzg.1,uc010xzh.1_5end | |association_with_transcript=0bp_to_ENST00000263274,ENST00000536218,ENST00000542460,NM_000234,uc002pia.1,uc002pib.1,uc010xzf.1,uc010xzg.1,uc010xzh.1_5end | ||
|cluster_id=chr19:48673552..48673578,- | |||
|coexpression_cluster_id=C1675 | |||
|description=CAGE_peak_2_at_LIG1_5end | |description=CAGE_peak_2_at_LIG1_5end | ||
|id=chr19:48673552..48673578,- | |id=chr19:48673552..48673578,- | ||
|ontology_enrichment_celltype=CL:0000066!2.72e-12!254;CL:0000012!2.82e-12!682;CL:0000548!6.21e-12!679;CL:0000004!6.21e-12!679;CL:0000255!6.21e-12!679;CL:0000003!6.31e-12!722;CL:0000063!1.53e-07!578 | |ontology_enrichment_celltype=CL:0000066!2.72e-12!254;CL:0000012!2.82e-12!682;CL:0000548!6.21e-12!679;CL:0000004!6.21e-12!679;CL:0000255!6.21e-12!679;CL:0000003!6.31e-12!722;CL:0000063!1.53e-07!578 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.12e-12,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.09e-28!235;DOID:14566!7.20e-27!239;DOID:2531!6.79e-24!51;DOID:0060083!6.79e-24!51;DOID:1240!9.97e-21!39;DOID:0050686!4.53e-17!137;DOID:8692!2.26e-16!31;DOID:0050687!1.61e-10!143;DOID:305!3.69e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.75e-16;39!DOID:8692;6.04e-16;31!DOID:2531;7.75e-15;51!DOID:0060083;7.75e-15;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.51e-28,235;DOID:14566,1.15e-26,239;DOID:2531,5.49e-24,51;DOID:0060083,5.49e-24,51;DOID:1240,8.30e-21,39;DOID:0050686,5.61e-17,137;DOID:8692,1.96e-16,31;DOID:0050687,1.94e-10,143;DOID:305,4.56e-09,106 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p2@LIG1 | |short_description=p2@LIG1 | ||
}} | }} |
Latest revision as of 01:31, 19 September 2015
Short description: | p2@LIG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LIG1_5end |
Coexpression cluster: | C1675_Hodgkin_Burkitt_retinoblastoma_Reticulocytes_granulocyte_diffuse_MCF7 |
Association with transcript: | 0bp_to_ENST00000263274, ENST00000536218, ENST00000542460, NM_000234, uc002pia.1, uc002pib.1, uc010xzf.1, uc010xzg.1, uc010xzh.1_5end |
EntrezGene: | LIG1 |
HGNC: | 6598 |
UniProt: | P18858F5GZ28B4E135 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.12e-12 | 253 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.51e-28 | 235 |
disease of cellular proliferation | 1.15e-26 | 239 |
hematologic cancer | 5.49e-24 | 51 |
immune system cancer | 5.49e-24 | 51 |
leukemia | 8.30e-21 | 39 |
organ system cancer | 5.61e-17 | 137 |
myeloid leukemia | 1.96e-16 | 31 |
cell type cancer | 1.94e-10 | 143 |
carcinoma | 4.56e-09 | 106 |