FFCP PHASE1:Hg19::chr1:183208607..183208635,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3918 | |EntrezGene=3918 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6493 | |HGNC=6493 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461729_5end | |association_with_transcript=0bp_to_ENST00000461729_5end | ||
|cluster_id=chr1:183208607..183208635,+ | |||
|coexpression_cluster_id=C268 | |coexpression_cluster_id=C268 | ||
|description=CAGE_peak_4_at_LAMC2_5end | |description=CAGE_peak_4_at_LAMC2_5end | ||
Latest revision as of 02:24, 19 September 2015
| Short description: | p4@LAMC2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_4_at_LAMC2_5end |
| Coexpression cluster: | C268_Mallassezderived_Urothelial_Gingival_Small_Bronchial_Tracheal_Prostate |
| Association with transcript: | 0bp_to_ENST00000461729_5end |
| EntrezGene: | LAMC2 |
| HGNC: | 6493 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p4@LAMC2 |
|---|
0
5
10
15
20
25
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 6.95e-27 | 42 |
| respiratory epithelial cell | 2.79e-26 | 13 |
| transitional epithelial cell | 1.74e-23 | 4 |
| urothelial cell | 1.74e-23 | 4 |
| epithelial cell | 4.80e-21 | 253 |
| general ecto-epithelial cell | 2.69e-19 | 14 |
| endodermal cell | 1.37e-18 | 58 |
| gingival epithelial cell | 4.88e-18 | 3 |
| epithelial cell of Malassez | 5.47e-18 | 3 |
| stratified squamous epithelial cell | 2.33e-15 | 6 |
Showing 1 to 10 of 38 entries
| Ontology term | p-value | n |
|---|---|---|
| urothelium | 7.92e-19 | 5 |
| gingival epithelium | 4.88e-18 | 3 |
| transitional epithelium | 1.02e-15 | 6 |
| jaw skeleton | 1.26e-13 | 4 |
| splanchnocranium | 1.26e-13 | 4 |
| mammary gland | 5.49e-13 | 4 |
| mammary bud | 5.49e-13 | 4 |
| mammary ridge | 5.49e-13 | 4 |
| mammary placode | 5.49e-13 | 4 |
| primary subdivision of cranial skeletal system | 5.35e-11 | 5 |
Showing 1 to 10 of 29 entries
