FFCP PHASE1:Hg19::chr17:2278441..2278454,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr17:2278441..2278454,+
|short_description=p13@SGSM2
|description=CAGE_peak_13_at_SGSM2_5end
|association_with_transcript=-331bp_to_uc002fup.1_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9905 | |EntrezGene=9905 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=29026 | |HGNC=29026 | ||
|TSSclassifier=strong | |||
|UniProt=O43147 | |UniProt=O43147 | ||
|association_with_transcript=-331bp_to_uc002fup.1_5end | |||
|cluster_id=chr17:2278441..2278454,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_13_at_SGSM2_5end | |||
|id=chr17:2278441..2278454,+ | |||
|ontology_enrichment_celltype=CL:0000349!1.56e-28!3;CL:0002577!1.56e-28!3;CL:0002536!1.64e-19!2;CL:0002541!1.70e-13!3;CL:0002537!1.52e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0000349;1.46e-82;19!CL:0002577;7.51e-74;3!CL:0002541;7.70e-34;3!CL:0002537;5.17e-21;5!CL:0002536;1.29e-13;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.46e-82,19;CL:0002577,9.64e-74,3;CL:0002541,7.70e-34,3;CL:0002537,4.92e-21,5;CL:0002536,1.21e-13,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!8.59e-65!14;UBERON:0000158!8.59e-65!14;UBERON:0003124!2.98e-47!7;UBERON:0000478!3.11e-37!24;UBERON:0001987!3.15e-37!4;UBERON:0004340!3.15e-37!4;UBERON:0000305!1.13e-21!7;UBERON:0004871!5.36e-19!8;UBERON:0004923!6.33e-18!57;UBERON:0000476!1.70e-13!3;UBERON:0000920!1.70e-13!3;UBERON:0001301!2.50e-10!1;UBERON:0003112!2.74e-10!1;UBERON:0000032!2.74e-10!1;UBERON:0005253!2.74e-10!1;UBERON:0003128!2.74e-10!1;UBERON:0002241!2.74e-10!1;UBERON:0001703!2.74e-10!1;UBERON:0004761!2.74e-10!1;UBERON:0009617!2.74e-10!1;UBERON:0001874!3.01e-10!1;UBERON:0004175!4.31e-09!25;UBERON:0000995!2.91e-07!21;UBERON:0005795!6.16e-07!22;UBERON:0003975!6.16e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.90e-65;24!UBERON:0005631;8.23e-62;10!UBERON:0000158;8.23e-62;10!UBERON:0001987;1.17e-55;4!UBERON:0003124;7.70e-34;3!UBERON:0000920;7.70e-34;3!UBERON:0000305;1.50e-32;7!UBERON:0000077;6.58e-09;27!UBERON:0004923;2.17e-08;55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.03e-112,14;UBERON:0000158,7.03e-112,14;UBERON:0003124,2.15e-87,7;UBERON:0000478,1.90e-65,24;UBERON:0001987,1.42e-55,4;UBERON:0004340,1.42e-55,4;UBERON:0000920,7.70e-34,3;UBERON:0000305,1.35e-32,7;UBERON:0004871,1.23e-28,8;UBERON:0004923,5.87e-24,66;UBERON:0000995,3.00e-11,21;UBERON:0005795,9.07e-11,22;UBERON:0003975,9.07e-11,22;UBERON:0004175,1.48e-09,25;UBERON:0000077,2.51e-08,29 | |||
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|short_description=p13@SGSM2 | |||
}} | }} |
Latest revision as of 03:03, 19 September 2015
Short description: | p13@SGSM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SGSM2_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -331bp_to_uc002fup.1_5end |
EntrezGene: | SGSM2 |
HGNC: | 29026 |
UniProt: | O43147 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p13@SGSM2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.46e-82 | 19 |
placental epithelial cell | 9.64e-74 | 3 |
chorionic membrane mesenchymal stem cell | 7.70e-34 | 3 |
amnion mesenchymal stem cell | 4.92e-21 | 5 |
amniotic epithelial cell | 1.21e-13 | 2 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.03e-112 | 14 |
membranous layer | 7.03e-112 | 14 |
chorion | 2.15e-87 | 7 |
extraembryonic structure | 1.90e-65 | 24 |
placenta | 1.42e-55 | 4 |
allantois | 1.42e-55 | 4 |
egg chorion | 7.70e-34 | 3 |
amnion | 1.35e-32 | 7 |
somatic layer of lateral plate mesoderm | 1.23e-28 | 8 |
organ component layer | 5.87e-24 | 66 |
Showing 1 to 10 of 15 entries