FFCP PHASE2:Hg19::chr6:53013620..53013644,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:8521 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4197 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=8521 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4197 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q9NP62 | ||
|association_with_transcript=0bp_to_ENST00000259803,NM_003643,uc003pbp.2,uc010jzr.2_5end | |association_with_transcript=0bp_to_ENST00000259803,NM_003643,uc003pbp.2,uc010jzr.2_5end | ||
|cluster_id=chr6:53013620..53013644,- | |cluster_id=chr6:53013620..53013644,- |
Latest revision as of 06:53, 19 September 2015
Short description: | p1@GCM1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCM1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000259803, NM_003643, uc003pbp.2, uc010jzr.2_5end |
EntrezGene: | GCM1 |
HGNC: | 4197 |
UniProt: | Q9NP62 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@GCM1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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chorionic membrane mesenchymal stem cell | 1.89e-50 | 3 |
germ line cell | 7.05e-22 | 7 |
germ cell | 7.05e-22 | 7 |
extraembryonic cell | 2.45e-14 | 19 |
epithelial cell of large intestine | 2.02e-09 | 2 |
Showing 1 to 5 of 5 entries
Ontology term | p-value | n |
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egg chorion | 1.89e-50 | 3 |
chorion | 1.73e-38 | 7 |
extraembryonic membrane | 9.03e-30 | 14 |
membranous layer | 9.03e-30 | 14 |
extraembryonic structure | 1.93e-17 | 24 |
organ component layer | 7.16e-09 | 66 |
Showing 1 to 6 of 6 entries
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.22e-17 | 1 |
endocrine pancreas cancer | 1.22e-17 | 1 |
pancreatic endocrine carcinoma | 1.22e-17 | 1 |
germ cell and embryonal cancer | 2.21e-07 | 22 |
germ cell cancer | 2.21e-07 | 22 |
Showing 1 to 5 of 5 entries