FFCP PHASE1:Hg19::chr12:56350792..56350801,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6490 | |EntrezGene=6490 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10880 | |HGNC=10880 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-469bp_to_ENST00000550762_5end | |association_with_transcript=-469bp_to_ENST00000550762_5end | ||
|cluster_id=chr12:56350792..56350801,- | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_16_at_PMEL_5end | |description=CAGE_peak_16_at_PMEL_5end | ||
|id=chr12:56350792..56350801,- | |id=chr12:56350792..56350801,- | ||
|ontology_enrichment_celltype=CL:0000148!1.77e-70!10;CL:0000541!1.77e-70!10;CL:0000147!2.76e-63!14;CL:0000710!6.61e-35!20;CL:0002567!1.24e-34!3;CL:0000075!1.16e-25!27;CL:0000325!4.20e-22!39;CL:0002077!7.52e-21!33;CL:0000133!6.19e-17!59;CL:0000333!8.32e-16!41;CL:0000221!6.16e-14!71;CL:0002566!1.25e-12!1;CL:0000149!3.86e-12!4;CL:0000540!3.37e-08!6;CL:0000031!3.37e-08!6;CL:0000404!3.37e-08!6;CL:0000039!3.56e-07!7;CL:0000586!3.56e-07!7 | |ontology_enrichment_celltype=CL:0000148!1.77e-70!10;CL:0000541!1.77e-70!10;CL:0000147!2.76e-63!14;CL:0000710!6.61e-35!20;CL:0002567!1.24e-34!3;CL:0000075!1.16e-25!27;CL:0000325!4.20e-22!39;CL:0002077!7.52e-21!33;CL:0000133!6.19e-17!59;CL:0000333!8.32e-16!41;CL:0000221!6.16e-14!71;CL:0002566!1.25e-12!1;CL:0000149!3.86e-12!4;CL:0000540!3.37e-08!6;CL:0000031!3.37e-08!6;CL:0000404!3.37e-08!6;CL:0000039!3.56e-07!7;CL:0000586!3.56e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000148;3.96e-96;10!CL:0000147;1.02e-68;14!CL:0002567;4.94e-60;3!CL:0000710;3.88e-48;20!CL:0000075;1.14e-35;27!CL:0002077;5.79e-25;34!CL:0002566;4.22e-21;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,3.44e-96,10;CL:0000541,3.44e-96,10;CL:0000147,9.22e-69,14;CL:0002567,3.65e-60,3;CL:0000710,3.62e-48,20;CL:0000075,1.09e-35,27;CL:0002077,2.44e-28,34;CL:0000333,2.15e-22,41;CL:0002566,4.22e-21,1;CL:0000133,9.58e-16,59;CL:0000221,6.06e-13,72 | |||
|ontology_enrichment_development_v019=CL:0000133;1.10e-08;59!CL:0000221;2.56e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!2.23e-23!2;DOID:1799!1.57e-12!1;DOID:10165!1.57e-12!1;DOID:1798!1.57e-12!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;6.98e-21;1!DOID:10165;6.98e-21;1!DOID:1798;6.98e-21;1!DOID:1909;2.02e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,6.31e-21,1;DOID:10165,6.31e-21,1;DOID:1798,6.31e-21,1;DOID:1909,2.02e-11,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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|short_description=p16@PMEL | |short_description=p16@PMEL | ||
}} | }} |
Latest revision as of 09:02, 19 September 2015
Short description: | p16@PMEL |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_PMEL_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | -469bp_to_ENST00000550762_5end |
EntrezGene: | PMEL |
HGNC: | 10880 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 3.44e-96 | 10 |
melanoblast | 3.44e-96 | 10 |
pigment cell | 9.22e-69 | 14 |
light melanocyte | 3.65e-60 | 3 |
neurecto-epithelial cell | 3.62e-48 | 20 |
columnar/cuboidal epithelial cell | 1.09e-35 | 27 |
ecto-epithelial cell | 2.44e-28 | 34 |
migratory neural crest cell | 2.15e-22 | 41 |
dark melanocyte | 4.22e-21 | 1 |
neurectodermal cell | 9.58e-16 | 59 |
ectodermal cell | 6.06e-13 | 72 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.31e-21 | 1 |
endocrine pancreas cancer | 6.31e-21 | 1 |
pancreatic endocrine carcinoma | 6.31e-21 | 1 |
melanoma | 2.02e-11 | 2 |