Personal tools

FFCP PHASE1:Hg19::chr1:85155993..85156003,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|DHSsupport=supported 
|DPIdataset=robust
|EntrezGene=117178
|EntrezGene=117178
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=16509
|HGNC=16509
|TSSclassifier=strong
|UniProt=
|UniProt=
|association_with_transcript=-6bp_to_ENST00000481102_5end
|association_with_transcript=-6bp_to_ENST00000481102_5end
|cluster_id=chr1:85155993..85156003,-
|description=CAGE_peak_10_at_SSX2IP_5end
|description=CAGE_peak_10_at_SSX2IP_5end
|id=chr1:85155993..85156003,-
|id=chr1:85155993..85156003,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_development_v019=UBERON:0009117;3.25e-14;10!UBERON:0005564;3.25e-14;10
|ontology_enrichment_development_v019=UBERON:0009117;3.25e-14;10!UBERON:0005564;3.25e-14;10
|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001869!5.94e-17!32;UBERON:0001893!6.92e-17!34;UBERON:0000955!1.37e-16!69;UBERON:0006238!1.37e-16!69;UBERON:0002020!1.67e-16!34;UBERON:0003528!1.67e-16!34;UBERON:0003075!5.45e-16!86;UBERON:0007284!5.45e-16!86;UBERON:0002791!7.28e-16!33;UBERON:0002346!1.49e-15!90;UBERON:0002780!3.30e-15!41;UBERON:0001890!3.30e-15!41;UBERON:0006240!3.30e-15!41;UBERON:0001049!4.00e-15!57;UBERON:0005068!4.00e-15!57;UBERON:0006241!4.00e-15!57;UBERON:0007135!4.00e-15!57;UBERON:0001017!1.15e-14!82;UBERON:0003056!1.15e-14!61;UBERON:0003080!1.22e-14!42;UBERON:0002616!2.96e-14!59;UBERON:0005743!3.20e-14!86;UBERON:0000956!5.76e-14!25;UBERON:0000203!5.76e-14!25;UBERON:0000033!1.22e-13!123;UBERON:0000073!3.61e-13!94;UBERON:0001016!3.61e-13!94;UBERON:0000153!7.51e-13!129;UBERON:0007811!7.51e-13!129;UBERON:0002619!1.47e-11!22;UBERON:0001950!2.79e-11!20;UBERON:0004121!3.54e-11!169;UBERON:0000924!4.34e-11!173;UBERON:0006601!4.34e-11!173;UBERON:0000064!1.14e-07!219
|ontology_enrichment_uberon=UBERON:0001869!5.94e-17!32;UBERON:0001893!6.92e-17!34;UBERON:0000955!1.37e-16!69;UBERON:0006238!1.37e-16!69;UBERON:0002020!1.67e-16!34;UBERON:0003528!1.67e-16!34;UBERON:0003075!5.45e-16!86;UBERON:0007284!5.45e-16!86;UBERON:0002791!7.28e-16!33;UBERON:0002346!1.49e-15!90;UBERON:0002780!3.30e-15!41;UBERON:0001890!3.30e-15!41;UBERON:0006240!3.30e-15!41;UBERON:0001049!4.00e-15!57;UBERON:0005068!4.00e-15!57;UBERON:0006241!4.00e-15!57;UBERON:0007135!4.00e-15!57;UBERON:0001017!1.15e-14!82;UBERON:0003056!1.15e-14!61;UBERON:0003080!1.22e-14!42;UBERON:0002616!2.96e-14!59;UBERON:0005743!3.20e-14!86;UBERON:0000956!5.76e-14!25;UBERON:0000203!5.76e-14!25;UBERON:0000033!1.22e-13!123;UBERON:0000073!3.61e-13!94;UBERON:0001016!3.61e-13!94;UBERON:0000153!7.51e-13!129;UBERON:0007811!7.51e-13!129;UBERON:0002619!1.47e-11!22;UBERON:0001950!2.79e-11!20;UBERON:0004121!3.54e-11!169;UBERON:0000924!4.34e-11!173;UBERON:0006601!4.34e-11!173;UBERON:0000064!1.14e-07!219
|ontology_enrichment_uberon_v019=UBERON:0000473;1.70e-17;8!UBERON:0003135;5.10e-13;11!UBERON:0002021;6.33e-08;5!UBERON:0000991;2.77e-07;21!UBERON:0003101;5.40e-07;22!UBERON:0000079;5.40e-07;22
|ontology_enrichment_uberon_v019=UBERON:0000473;1.70e-17;8!UBERON:0003135;5.10e-13;11!UBERON:0002021;6.33e-08;5!UBERON:0000991;2.77e-07;21!UBERON:0003101;5.40e-07;22!UBERON:0000079;5.40e-07;22
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.44e-17,8;UBERON:0003135,4.52e-13,11;UBERON:0002021,6.55e-08,5;UBERON:0000991,2.60e-07,21;UBERON:0009196,2.60e-07,21;UBERON:0009117,2.60e-07,21;UBERON:0005564,2.60e-07,21;UBERON:0004176,5.09e-07,22;UBERON:0003101,5.09e-07,22;UBERON:0000079,5.09e-07,22
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.458426764241994,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.337552664482532,0.194874010322397,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.463721619900307,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0.364182336013434,0.131124414959424,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330037999682352,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0.111443384277478,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0.409074730008619,0,0.311039587661807,0,0,0,0,0,0,1.93866549219044,0.834912883456661,0,0,0.0874599999961957,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0.241192877250816,0,0.331737779793674,0.591095237907095,0,0.544692317594951,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0.166211681900156,1.1279783030859,0.19606253431774,0.671286347903371,0,0,0,0.163232808159148,0,0.216388639742091,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0.664653872707185,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0.0967563312890851,0.365446585430928,0.0821154570532092,0,0,1.12990370390266,0,0,0.823040347426423,0,0.320635281006135,0,0.19980960958213,0,0.229073192331831,0.171594997861965,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0.0846733320657845,0,0.544813624446302,0,0,0,0,0,0.425246896606173,0,0,0,0.105600336519406,0,0.383830394638891,0,0,0.25426853765475,0,0,0.326587360109409,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.854183854313742,0.1251909307065,0.573409195690071,0.332787154610557,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0.149254802886874,0,0.554805861502613,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,1.41696576325585,0.319267718114302,0.82046545696302,0,0.484100767249525,0.322951291263702,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.570742291745161,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.611727596791485,0.197318320688547,0.236387681767936,0,0,0.314231179832004,0,0,0.215927591218621,0,0.142953088353313,0.316027223465453,0,0.173858272302579,0,0,0.17071847709395,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0.356760272332706,0.22589216407792,0.439762066981716,0.150962843566674,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0.143339583151451,0.157771562193185,0.203974470572744,0.436350690340377,0,0,0,0,0,0.327796715891087,0,0.101988829741982,0,0.18378979906969,0,1.89446745545599,1.87574891109325,0,0.20686599172379,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0.332660356546013,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0,0.087834785693126,0.458426764241994,0,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0.245668634623536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0.337552664482532,0.194874010322397,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0.463721619900307,0.117408694235822,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0.144119953416961,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0.364182336013434,0.131124414959424,0,0,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330037999682352,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.636406495851874,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36408156524854,0.111443384277478,0,0,0,0,0,0.703347082052564,0,0,0,0,0,0,0.409074730008619,0,0.311039587661807,0,0,0,0,0,0,1.93866549219044,0.834912883456661,0,0,0.0874599999961957,0,0,0,0.236387681767936,0.344743373241465,0,0,0,0.241192877250816,0,0.331737779793674,0.591095237907095,0,0.544692317594951,0.139423744278603,0,0.113942055847001,0,0,0,0,0,0,0,0,0.166211681900156,1.1279783030859,0.19606253431774,0.671286347903371,0,0,0,0.163232808159148,0,0.216388639742091,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.126373159256976,0,0,0.664653872707185,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0,0,0.17472666824203,0,0.0967563312890851,0.365446585430928,0.0821154570532092,0,0,1.12990370390266,0,0,0.823040347426423,0,0.320635281006135,0,0.19980960958213,0,0.229073192331831,0.171594997861965,0,0,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0.0846733320657845,0,0.544813624446302,0,0,0,0,0,0.425246896606173,0,0,0,0.105600336519406,0,0.383830394638891,0,0,0.25426853765475,0,0,0.326587360109409,0,0,0,0.226624183040251,0,0,0,0.13223260174269,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.314108192500469,0.886068179966986,0.854183854313742,0.1251909307065,0.573409195690071,0.332787154610557,0,0,0.124980407962107,0,0,0,0,0.144921028610825,0.149254802886874,0,0.554805861502613,0,0,0,0.228840068396924,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,0,0.226705925512272,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0.245772908753719,0,0,0,0,0,0,0.139879507719444,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513833800771676,1.41696576325585,0.319267718114302,0.82046545696302,0,0.484100767249525,0.322951291263702,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.540300676947157,0,0.206686796501184,0.570742291745161,0,0,0,0.175871244359621,0,0,0,0,0,0,0,0,0.611727596791485,0.197318320688547,0.236387681767936,0,0,0.314231179832004,0,0,0.215927591218621,0,0.142953088353313,0.316027223465453,0,0.173858272302579,0,0,0.17071847709395,0,0,0.236664001461131,0.0852134047591577,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0.356760272332706,0.22589216407792,0.439762066981716,0.150962843566674,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0.143339583151451,0.157771562193185,0.203974470572744,0.436350690340377,0,0,0,0,0,0.327796715891087,0,0.101988829741982,0,0.18378979906969,0,1.89446745545599,1.87574891109325,0,0.20686599172379,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0.332660356546013,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0,0
|short_description=p10@SSX2IP
|short_description=p10@SSX2IP
}}
}}

Latest revision as of 12:27, 19 September 2015

Short description:p10@SSX2IP
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_10_at_SSX2IP_5end
Coexpression cluster:NA
Association with transcript: -6bp_to_ENST00000481102_5end
EntrezGene:SSX2IP
HGNC: 16509
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
0.5
1.0
1.5
2.0




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data