FFCP PHASE1:Hg19::chr2:20425682..20425693,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=-488bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | |association_with_transcript=-488bp_to_ENST00000381150,NM_001006946,uc002rdp.1_5end | ||
|cluster_id=chr2:20425682..20425693,- | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_17_at_SDC1_5end | |description=CAGE_peak_17_at_SDC1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000223!3.01e-10!59;CL:0002621!4.38e-08!3;CL:0000181!3.38e-07!12;CL:0000417!3.38e-07!12;CL:0000668!3.38e-07!12;CL:0000414!3.38e-07!12;CL:0000412!3.38e-07!12;CL:0000182!3.38e-07!12 | |ontology_enrichment_celltype=CL:0000223!3.01e-10!59;CL:0002621!4.38e-08!3;CL:0000181!3.38e-07!12;CL:0000417!3.38e-07!12;CL:0000668!3.38e-07!12;CL:0000414!3.38e-07!12;CL:0000412!3.38e-07!12;CL:0000182!3.38e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000307;7.02e-08;3!CL:0000182;1.31e-07;12 | |ontology_enrichment_celltype_v019=CL:0000307;7.02e-08;3!CL:0000182;1.31e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000068,7.76e-08,3;CL:0000069,7.76e-08,3;CL:0000307,7.76e-08,3;CL:0000377,7.76e-08,3;CL:0000182,1.29e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000377;7.02e-08;3 | |ontology_enrichment_development_v019=CL:0000377;7.02e-08;3 | ||
|ontology_enrichment_disease=DOID:3493!4.97e-11!2 | |ontology_enrichment_disease=DOID:3493!4.97e-11!2 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009497!2.68e-12!25;UBERON:0000015!2.68e-12!25;UBERON:0002423!2.68e-12!25;UBERON:0006235!2.68e-12!25;UBERON:0004161!2.68e-12!25;UBERON:0003929!1.69e-11!54;UBERON:0001007!6.05e-10!155;UBERON:0001555!6.05e-10!155;UBERON:0007026!6.05e-10!155;UBERON:0004119!7.87e-10!169;UBERON:0000925!7.87e-10!169;UBERON:0006595!7.87e-10!169;UBERON:0005911!1.87e-09!82;UBERON:0008835!4.09e-08!22;UBERON:0003894!4.09e-08!22;UBERON:0001949!4.38e-08!3;UBERON:0002110!6.21e-08!3;UBERON:0006242!6.21e-08!3;UBERON:0005172!8.77e-08!55;UBERON:0005173!8.77e-08!55;UBERON:0004921!9.78e-08!129;UBERON:0004185!9.78e-08!129;UBERON:0009854!9.81e-08!23;UBERON:0000077!1.09e-07!130;UBERON:0002294!3.27e-07!7;UBERON:0001173!3.27e-07!7;UBERON:0004912!3.27e-07!7;UBERON:0007499!4.57e-07!25;UBERON:0002417!7.63e-07!61;UBERON:0000916!7.63e-07!61;UBERON:0002107!8.29e-07!19;UBERON:0006925!8.29e-07!19;UBERON:0008836!8.29e-07!19;UBERON:0009856!9.02e-07!26 | |ontology_enrichment_uberon=UBERON:0009497!2.68e-12!25;UBERON:0000015!2.68e-12!25;UBERON:0002423!2.68e-12!25;UBERON:0006235!2.68e-12!25;UBERON:0004161!2.68e-12!25;UBERON:0003929!1.69e-11!54;UBERON:0001007!6.05e-10!155;UBERON:0001555!6.05e-10!155;UBERON:0007026!6.05e-10!155;UBERON:0004119!7.87e-10!169;UBERON:0000925!7.87e-10!169;UBERON:0006595!7.87e-10!169;UBERON:0005911!1.87e-09!82;UBERON:0008835!4.09e-08!22;UBERON:0003894!4.09e-08!22;UBERON:0001949!4.38e-08!3;UBERON:0002110!6.21e-08!3;UBERON:0006242!6.21e-08!3;UBERON:0005172!8.77e-08!55;UBERON:0005173!8.77e-08!55;UBERON:0004921!9.78e-08!129;UBERON:0004185!9.78e-08!129;UBERON:0009854!9.81e-08!23;UBERON:0000077!1.09e-07!130;UBERON:0002294!3.27e-07!7;UBERON:0001173!3.27e-07!7;UBERON:0004912!3.27e-07!7;UBERON:0007499!4.57e-07!25;UBERON:0002417!7.63e-07!61;UBERON:0000916!7.63e-07!61;UBERON:0002107!8.29e-07!19;UBERON:0006925!8.29e-07!19;UBERON:0008836!8.29e-07!19;UBERON:0009856!9.02e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.92e-10;19!UBERON:0006925;3.92e-10;19!UBERON:0002423;7.66e-08;25 | |ontology_enrichment_uberon_v019=UBERON:0002107;3.92e-10;19!UBERON:0006925;3.92e-10;19!UBERON:0002423;7.66e-08;25 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.92e-10,19;UBERON:0006925,3.92e-10,19;UBERON:0008836,3.92e-10,19;UBERON:0008835,7.82e-09,22;UBERON:0003894,7.82e-09,22;UBERON:0009854,1.79e-08,23;UBERON:0007499,7.66e-08,25;UBERON:0009497,7.66e-08,25;UBERON:0000015,7.66e-08,25;UBERON:0002423,7.66e-08,25;UBERON:0006235,7.66e-08,25;UBERON:0004161,7.66e-08,25;UBERON:0009856,1.46e-07,26 | |||
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|short_description=p17@SDC1 | |short_description=p17@SDC1 | ||
}} | }} |
Latest revision as of 15:45, 19 September 2015
Short description: | p17@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_SDC1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -488bp_to_ENST00000381150, NM_001006946, uc002rdp.1_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 7.76e-08 | 3 |
branched duct epithelial cell | 7.76e-08 | 3 |
tracheal epithelial cell | 7.76e-08 | 3 |
tracheoblast | 7.76e-08 | 3 |
hepatocyte | 1.29e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 3.92e-10 | 19 |
digestive gland | 3.92e-10 | 19 |
liver bud | 3.92e-10 | 19 |
hepatic diverticulum | 7.82e-09 | 22 |
liver primordium | 7.82e-09 | 22 |
digestive tract diverticulum | 1.79e-08 | 23 |
epithelial sac | 7.66e-08 | 25 |
epithelium of foregut-midgut junction | 7.66e-08 | 25 |
anatomical boundary | 7.66e-08 | 25 |
hepatobiliary system | 7.66e-08 | 25 |
foregut-midgut junction | 7.66e-08 | 25 |
septum transversum | 7.66e-08 | 25 |
sac | 1.46e-07 | 26 |