FFCP PHASE1:Hg19::chr18:47901408..47901430,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:47901408..47901430,+
|short_description=p2@SKA1
|description=CAGE_peak_2_at_SKA1_5end
|association_with_transcript=0bp_to_ENST00000488454,ENST00000494518_...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=220134 | |EntrezGene=220134 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28109 | |HGNC=28109 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000488454,ENST00000494518_5end | |||
|cluster_id=chr18:47901408..47901430,+ | |||
|coexpression_cluster_id=C3724 | |||
|description=CAGE_peak_2_at_SKA1_5end | |||
|id=chr18:47901408..47901430,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.06e-19!679;CL:0000004!1.06e-19!679;CL:0000255!1.06e-19!679;CL:0000012!3.15e-19!682;CL:0000066!1.58e-16!254;CL:0000003!2.80e-11!722;CL:0002321!6.33e-10!248;CL:0000220!1.07e-09!246;CL:0000063!1.57e-09!578;CL:0000144!4.95e-09!625;CL:0000055!2.55e-08!180 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.16e-15,253;CL:0002321,1.00e-08,250 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!4.17e-41!239;DOID:162!4.50e-41!235;DOID:0050686!2.20e-24!137;DOID:2531!1.24e-23!51;DOID:0060083!1.24e-23!51;DOID:1240!5.54e-18!39;DOID:0050687!2.93e-15!143;DOID:8692!2.11e-13!31;DOID:305!4.77e-11!106 | |||
|ontology_enrichment_disease_v019=DOID:2531;5.87e-15;51!DOID:0060083;5.87e-15;51!DOID:1240;6.49e-15;39!DOID:8692;1.33e-13;31!DOID:0050686;6.94e-07;137!DOID:0060058;7.57e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.68e-41,235;DOID:14566,2.72e-41,239;DOID:0050686,1.43e-24,137;DOID:2531,1.83e-24,51;DOID:0060083,1.83e-24,51;DOID:1240,1.33e-18,39;DOID:0050687,4.70e-15,143;DOID:8692,7.58e-14,31;DOID:305,9.16e-11,106;DOID:0060058,7.01e-07,10 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0.726713517082227,1.07050261945492,0.140954404095971,0,0,0.872338524100369,2.53299878168311,0,0,9.09215565055583,4.18680700783456,10.4851858622483,4.48403862988371,0.37129905888014,0,1.34465029290355,0,1.46062018077475,0.975865597581014,11.0808952269109,6.9360235023046,2.5076377718247,6.29719171688325,9.17058647988324,11.0477522843426,12.2261449196722,17.4053249633885,18.890587515283,0,0.767658796194425,0,4.59710612239464,5.4217065380085,3.69754010166788,20.3738737526193,16.0651232710786,3.22960483268332,0,0.200544447470142,0,0.447830948479849,0.647787332037959,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622822248995575,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0.587237189370939,0.382273228125229,0,0,6.32121803460185,0.196709770113833,0,0,1.00311897234407,0.32592226663359,0,0,2.33961959458865,0.589211814949674,0,0.541607727530031,5.37983542847836,4.29195846947598,5.26201294731764,4.97430032014527,2.31842468588042,0,0,0,3.62589896632212,0,0,0,0,0.651083453856419,0,0.301150238155546,0.383959833463255,1.24930726552346,0.236777252044017,0,0.403213486449465,0.267440195783507,0.289648807765598,0,8.04841031644363,4.98663991189768,13.373248638229,1.50401373190767,2.17269778441236,8.74814541756209,1.45990461090791,6.61743720148475,1.77383517970051,2.63504357079378,2.35762335895883,4.73583874780305,10.7527488407485,0,0.174129737299267,0.132957960518865,0,0,0.371457501329565,7.55297147993479,10.3228151412735,5.9013885273291,2.82653970962005,3.77549492588915,5.77747888074142,6.47884396264113,0.775250277507987,1.42306505074684,2.00832367658802,3.62546385398232,3.04108842287405,2.19655851793353,6.61793544622564,3.24056779152704,15.0023543517254,8.53211615979445,16.2160531895984,9.19899824795299,2.84779697870439,6.41206103756425,0,0,8.72188104285069,0.496971951695318,4.17880688493113,0.132409180813219,2.0078563452417,8.51204117276057,3.92474320099615,1.06748995729705,1.48000529050296,6.53543174339509,5.38842688278752,9.31732847746715,2.11900398702904,0,18.0427502512023,1.5608003841516,5.70471821544449,1.34503812496621,16.5582643087708,14.7304379375,14.6068838970338,4.08308342509786,11.7920944619297,3.09977343527296,0,1.97813543422845,14.5625817910084,3.59309070908119,15.150250255866,16.8910001827152,12.7449493122724,11.4134181429018,2.75839016219118,3.60571341375832,9.75516775176181,3.40840307808838,1.49490172172997,2.7551147150743,2.40072876867522,2.67936576019941,1.03056216018252,1.8611685633159,5.56961896396179,6.13853132515551,2.52433774244115,0.736399189138395,1.45481451136931,2.84007674013291,6.2466300901137,9.6649537616978,2.12586938479627,2.72746120590835,3.15485054927904,4.87894824518382,7.55419679432466,6.73924868643207,5.80501908086074,8.07426722802011,7.66452454059243,0,0,0,0.464367928031979,0,5.67872640191251,8.59781919398319,8.91740810568883,5.07352274569012,10.6760927605279,8.30447166888838,5.66291494272691,7.06397274451246,8.46443745282059,6.64339909162183,7.01208869017229,6.173610169971,1.47008711385542,0,0.982827216677626,0.590789906681404,11.4780405847809,4.05861847192275,3.94605963686609,1.09750285408626,0,12.4655925790422,3.33318402570707,6.84197441151682,11.4392826380754,4.3299402607582,3.94163376915261,1.29149563659404,4.18662698507114,2.77791307545966,2.28304982681518,1.58040879591855,3.43394464837949,0.738651018262192,1.8720341211139,5.49935300468294,0,2.18376766658517,5.67100388969546,14.9562732913757,11.3347236020445,5.75074018747817,2.95597942737566,6.25143881493905,0,0.864719720501769,0,11.9376041269278,3.81988425558278,3.51652341630141,8.55362230113526,6.88944201112268,3.90445975197093,1.71495859578347,15.4740896396598,5.66748089483264,13.274229733592,0.387815147273333,0,9.298330278116,1.32969058292435,7.28052058379563,21.8626268122821,31.2068090451212,16.2517529199821,2.28764789853036,2.71310802695722,11.5253647149308,12.7037111874557,1.77695974371273,10.2953743481346,0.602878754119172,0.871533458600294,3.89894665610022,0,1.00451418286425,0,1.67737398844108,0,17.1164286048862,3.32997005335432,3.08214483825575,7.87868238255541,43.0406952935145,0.197030760201927,0.431255149719035,0.77005821767849,3.81141936333695,1.30139853857622,2.31986643833309,2.01019518401218,1.91381625495949,0,0,0.414415513436035,0.12269149171914,0,0.542530047399471,1.24782516918484,3.21172179834891,1.73472656537328,3.39710103478868,0,0,2.0694614258501,11.9560607736379,8.48098175291834,5.38678409702114,0.979005787313703,0.343143423810856,0,0,0.426910231213777,1.5156378572313,8.32177197552485,5.44302527993425,0.248107807818777,0.306923946576125,1.12264037773229,0.128139149255701,1.53512174720011,0,0,10.6404688723832,3.37367278094941,10.6765302817952,8.30807086693794,8.13472649219715,3.14234568938218,1.40354529212299,0,14.8110638132343,11.6538347524299,1.57349297951309,13.9871880001298,5.16002758599579,17.2556949218908,13.1525302187935,3.58875538235777,15.9226737699255,9.86543490603791,12.0912913017198,1.54227252690289,6.50271450105247,3.51182841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|short_description=p2@SKA1 | |||
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Latest revision as of 18:24, 19 September 2015
Short description: | p2@SKA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SKA1_5end |
Coexpression cluster: | C3724_retinoblastoma_Reticulocytes_acute_adrenal_NK_myxofibrosarcoma_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000488454, ENST00000494518_5end |
EntrezGene: | SKA1 |
HGNC: | 28109 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.16e-15 | 253 |
embryonic cell | 1.00e-08 | 250 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.68e-41 | 235 |
disease of cellular proliferation | 2.72e-41 | 239 |
organ system cancer | 1.43e-24 | 137 |
hematologic cancer | 1.83e-24 | 51 |
immune system cancer | 1.83e-24 | 51 |
leukemia | 1.33e-18 | 39 |
cell type cancer | 4.70e-15 | 143 |
myeloid leukemia | 7.58e-14 | 31 |
carcinoma | 9.16e-11 | 106 |
lymphoma | 7.01e-07 | 10 |