FFCP PHASE1:Hg19::chrX:150151772..150151817,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:150151772..150151817,+
|short_description=p1@HMGB3
|description=CAGE_peak_1_at_HMGB3_5end
|association_with_transcript=9bp_to_NM_005342,uc004fep.2,uc004feq...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3149 | |EntrezGene=3149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5004 | |HGNC=5004 | ||
|TSSclassifier=strong | |||
|UniProt=O15347,Q7Z684 | |UniProt=O15347,Q7Z684 | ||
|association_with_transcript=9bp_to_NM_005342,uc004fep.2,uc004feq.2_5end | |||
|cluster_id=chrX:150151772..150151817,+ | |||
|description=CAGE_peak_1_at_HMGB3_5end | |||
|id=chrX:150151772..150151817,+ | |||
|ontology_enrichment_celltype=CL:0000012!4.40e-19!682;CL:0000548!1.50e-18!679;CL:0000004!1.50e-18!679;CL:0000255!1.50e-18!679;CL:0000066!1.61e-17!254;CL:0000063!7.04e-10!578;CL:0000003!1.03e-08!722;CL:0002321!1.17e-07!248;CL:0000144!1.26e-07!625;CL:0000221!1.29e-07!71;CL:0002319!1.88e-07!25;CL:0000220!4.22e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002319;3.48e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.59e-18,253;CL:0000221,9.63e-08,72;CL:0002321,1.54e-07,250;CL:0002319,1.83e-07,25 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.83e-36!235;DOID:14566!2.60e-35!239;DOID:0050686!5.41e-20!137;DOID:0050687!9.07e-19!143;DOID:305!1.45e-15!106;DOID:2531!4.33e-13!51;DOID:0060083!4.33e-13!51;DOID:1240!5.68e-13!39;DOID:8692!1.23e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;3.64e-12;31!DOID:1240;1.35e-10;39!DOID:2531;1.54e-08;51!DOID:0060083;1.54e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.32e-36,235;DOID:14566,3.29e-35,239;DOID:0050686,6.02e-20,137;DOID:0050687,1.16e-18,143;DOID:305,1.39e-15,106;DOID:2531,4.15e-13,51;DOID:0060083,4.15e-13,51;DOID:1240,5.44e-13,39;DOID:8692,1.18e-12,31 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
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| ||
|short_description=p1@HMGB3 | |||
}} | }} |
Latest revision as of 22:16, 19 September 2015
Short description: | p1@HMGB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 9bp_to_NM_005342, uc004fep.2, uc004feq.2_5end |
EntrezGene: | HMGB3 |
HGNC: | 5004 |
UniProt: | O15347Q7Z684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.59e-18 | 253 |
ectodermal cell | 9.63e-08 | 72 |
embryonic cell | 1.54e-07 | 250 |
neural cell | 1.83e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.32e-36 | 235 |
disease of cellular proliferation | 3.29e-35 | 239 |
organ system cancer | 6.02e-20 | 137 |
cell type cancer | 1.16e-18 | 143 |
carcinoma | 1.39e-15 | 106 |
hematologic cancer | 4.15e-13 | 51 |
immune system cancer | 4.15e-13 | 51 |
leukemia | 5.44e-13 | 39 |
myeloid leukemia | 1.18e-12 | 31 |