FFCP PHASE1:Hg19::chr12:66218152..66218174,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:66218152..66218174,+
|short_description=p10@HMGA2
|description=CAGE_peak_10_at_HMGA2_5end
|association_with_transcript=-65bp_to_ENST00000354636,ENST000003...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | |UniProt=Q1M182,Q1M188,Q1M186,F5H6H0,Q1M187,Q1M185,P52926 | ||
|association_with_transcript=-65bp_to_ENST00000354636,ENST00000393578,ENST00000425208,ENST00000536545,ENST00000537275,ENST00000537429,NM_003483,NM_003484,uc001sss.1,uc001sst.1,uc001ssu.1,uc001ssv.2,uc001ssw.1,uc001ssx.2,uc010ssv.1_5end | |||
|cluster_id=chr12:66218152..66218174,+ | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_10_at_HMGA2_5end | |||
|id=chr12:66218152..66218174,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.77e-22!248;CL:0000220!2.67e-21!246;CL:0000066!3.53e-18!254;CL:0000055!4.49e-17!180;CL:0000548!6.50e-17!679;CL:0000004!6.50e-17!679;CL:0000255!6.50e-17!679;CL:0000012!2.92e-16!682;CL:0002371!1.03e-12!591;CL:0000144!9.26e-12!625;CL:0000003!8.10e-09!722;CL:0000223!2.45e-08!59;CL:0000222!2.91e-08!119;CL:1000449!5.77e-08!16;CL:1000497!1.99e-07!18;CL:0002518!1.99e-07!18;CL:0002076!4.44e-07!43;CL:0000057!7.97e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.26e-08;15!CL:1000497;4.04e-08;17!CL:0002518;4.04e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.34e-16,250;CL:0000066,1.03e-13,253;CL:1000449,1.31e-08,15;CL:1000497,2.96e-08,17;CL:0002518,2.96e-08,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.34e-14!312;UBERON:0000483!3.58e-13!309;UBERON:0005256!1.30e-12!143;UBERON:0000490!5.38e-12!138;UBERON:0003914!2.73e-11!118;UBERON:0002100!4.46e-10!216;UBERON:0000475!2.20e-09!365;UBERON:0003104!6.94e-09!238;UBERON:0009142!6.94e-09!238;UBERON:0000486!1.75e-08!82;UBERON:0000481!2.64e-08!347;UBERON:0004211!5.77e-08!16;UBERON:0001285!5.77e-08!16;UBERON:0007684!5.77e-08!16;UBERON:0003220!5.77e-08!16;UBERON:0004208!5.77e-08!16;UBERON:0000019!6.89e-08!19;UBERON:0000047!6.89e-08!19;UBERON:0004088!6.89e-08!19;UBERON:0003072!6.89e-08!19;UBERON:0003071!6.89e-08!19;UBERON:0004128!6.89e-08!19;UBERON:0000914!7.25e-08!83;UBERON:0002329!7.25e-08!83;UBERON:0003077!7.25e-08!83;UBERON:0003059!7.25e-08!83;UBERON:0007282!7.25e-08!83;UBERON:0009618!7.25e-08!83;UBERON:0007285!7.25e-08!83;UBERON:0005085!1.50e-07!29;UBERON:0001444!2.14e-07!48;UBERON:0000468!2.48e-07!659;UBERON:0002049!2.75e-07!79;UBERON:0007798!2.75e-07!79;UBERON:0000970!4.18e-07!20;UBERON:0006555!4.40e-07!17;UBERON:0005103!4.40e-07!17;UBERON:0000083!4.40e-07!17;UBERON:0009201!4.40e-07!17;UBERON:0004819!4.40e-07!17;UBERON:0006553!4.40e-07!17;UBERON:0003074!4.40e-07!17;UBERON:0003060!4.40e-07!17;UBERON:0001456!5.42e-07!21;UBERON:0000922!5.72e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.99e-09;30!UBERON:0001008;4.99e-09;30!UBERON:0010371;1.09e-08;31!UBERON:0000019;1.12e-08;19!UBERON:0000047;1.12e-08;19!UBERON:0004088;1.12e-08;19!UBERON:0010230;1.12e-08;19!UBERON:0006555;1.26e-08;15!UBERON:0004819;1.26e-08;15!UBERON:0001285;1.26e-08;15!UBERON:0007684;1.26e-08;15!UBERON:0007625;2.36e-08;11!UBERON:0000970;5.51e-08;20!UBERON:0002104;2.29e-07;21!UBERON:0001456;2.29e-07;21!UBERON:0000490;2.53e-07;33!UBERON:0002113;5.00e-07;24!UBERON:0011143;5.00e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.98e-13,309;UBERON:0000483,2.89e-12,306;UBERON:0000490,5.05e-09,148;UBERON:0003104,9.25e-09,160;UBERON:0009142,9.25e-09,160;UBERON:0004211,1.31e-08,15;UBERON:0009773,1.31e-08,15;UBERON:0001231,1.31e-08,15;UBERON:0001285,1.31e-08,15;UBERON:0007684,1.31e-08,15;UBERON:0004208,1.31e-08,15;UBERON:0007625,2.46e-08,11;UBERON:0000019,5.06e-08,20;UBERON:0000047,5.06e-08,20;UBERON:0010312,5.06e-08,20;UBERON:0004088,5.06e-08,20;UBERON:0010230,5.06e-08,20;UBERON:0003072,5.06e-08,20;UBERON:0004128,5.06e-08,20;UBERON:0003071,5.06e-08,20;UBERON:0003914,8.47e-08,117;UBERON:0006555,8.47e-08,16;UBERON:0004819,8.47e-08,16;UBERON:0002100,9.02e-08,199;UBERON:0005177,1.69e-07,101;UBERON:0005085,1.75e-07,31;UBERON:0000970,2.11e-07,21;UBERON:0002104,2.11e-07,21;UBERON:0000922,4.37e-07,592;UBERON:0000033,6.03e-07,56;UBERON:0001456,7.65e-07,22 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0.631719873426831,0,4.91467873003018,2.09340350391728,0.873765488520689,0.527533956456907,1.73272894144065,1.32558950291166,1.34465029290355,0.602694528023977,0.730310090387373,0.487932798790507,2.09305798730539,1.22400414746552,0,1.14494394852423,1.09499540058307,1.88313959392204,0.305653622991805,0.246301768349837,0.944529375764151,0,0,0,0.919421224478927,1.8072355126695,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0.361439152384566,0.50133791063589,0,3.1811437882044,0.486634870302636,3.68685786939865,3.54767035940102,3.77689578480442,0.130979075497713,0.728590576585084,0.741568885568859,0,0,0,0,0,0,0.79504962946682,1.72046919021225,2.08284300964557,0.56530794192401,3.35599548967925,2.20094433552054,2.71693456497854,0.516833518338658,0.71153252537342,0.66944122552934,0.805658634218294,0,0,3.30896772311282,2.43042584364528,4.91148505562439,3.36794058939255,9.00891843866578,1.53316637465883,3.79706263827252,0.916008719652036,0,0,0.872188104285069,0.496971951695318,1.13967460498122,0.794455084879313,1.72101972449288,1.06400514659507,0.560677600142307,1.06748995729705,1.48000529050296,2.48968828319813,0.538842688278752,4.25000948094993,1.51357427644931,1.15235184896,0.468642863667593,0.312160076830321,0.570471821544449,0.597794722207204,4.22764195117554,4.20869655357142,5.89893388149444,1.63323337003915,5.40470996171779,1.13658359293342,0,0,0,0,7.07011678607078,8.3829408314216,1.10825646193673,0.877955241761676,0.612975591598039,0.901428353439581,2.04177929688038,1.79389635688862,0,0.635795703478686,3.30100205692843,0.206105058476878,0.257640540045629,0.18611685633159,1.35021065793013,0.292311015483596,0.757301322732344,0.184099797284599,0.80823028409406,0.355009592516614,0.302256294682921,1.18692414617341,2.51239109112286,3.54569956768085,4.01526433544605,7.19644866164613,7.02407772103872,7.78499417225773,6.53064646596834,7.82194637714448,5.10968302706162,0,0,1.38134921352481,1.39310378409594,0,0,0,0,0,0,0,0,0,0,1.4763109092493,1.40241773803446,0.8231480226628,1.47008711385542,0,0,0,0.882926198829301,1.59884970106048,3.25978839567199,1.64625428112938,0,2.51322431029077,6.75895649657266,1.62904152655162,3.11980435583874,2.88662684050547,3.014190529352,1.17408694235822,0.577465791044295,1.38895653772983,0.190254152234598,0,0,0,0,0,0.93733833986777,1.17587489739202,2.1266264586358,0.985143749731331,1.74380363108377,2.30029607499127,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,4.48524337381443,2.61576041299968,7.333828582095,1.68053230485111,0,0.845302752556,0.26593811658487,1.04007436911366,2.82928111688356,4.25547396069835,4.52917704327369,0.285955987316295,0,1.64648067356154,2.28015329005615,0.355391948742546,2.37585561880029,0,1.74306691720059,0,0,0,0,0.718874566474748,0,5.70547620162874,1.01346914667305,2.05476322550383,1.61154866915906,0,0,0,0,2.03275699377971,2.60279707715243,0,0,1.91381625495949,0,0,0,1.10422342547226,2.50085260529839,0.813795071099207,0,0.178428988797162,0,0.35142424497814,0.601892199455438,2.27407504055985,2.0694614258501,1.99267679560631,0.737476674166813,2.34585759063824,1.95801157462741,1.02943027143257,0,0,0,0.303127571446259,0,1.81434175997808,0.248107807818777,0,0,0,0,0.160853921143607,0,3.85524234506639,0.887808626565635,3.03870477251094,2.07701771673448,1.97557643381931,1.45031339509947,1.80455823272956,0.460404944679482,0.229628896329213,1.45672934405374,0,2.70719767744447,6.46928831677084,3.13739907670742,4.38417673959782,5.06647818685803,2.27466768141793,2.38131187387122,3.02282282542995,1.54227252690289,2.43851793789468,2.50844886927427,1.27438136522519,0.831076008928724,1.56712328305525,0.219259876645935,0,4.87255237721139,4.59220503979588,3.90454073597164,0,0.0915694648183434,0.41254749960294,1.14853107599234,1.95018073810956,0,1.64340221096607,3.08097234229289,2.30255512089194,3.99726060205139,3.33002759091648,1.16013355131383,5.36927752721436,0.534192213880424,0.826424576804891,1.15314040419064,10.0814042870721,0.30347334256665,0.464845549297286,0.94443704049192,0,0.616067160352178,0,0.869932992075073,0.55597265731176,0.143124886741991,1.116475108079,2.21465597303108,0.38126038784765,1.79128453917934,2.56763392820352,1.90921948755562,1.56989728039846,1.2591072030832,1.09814811894422,1.88499843753098,1.01091240786658,0,0.421258456238981,0,0.487426979262569,0,0.272999822815972,0.282810863907425,1.13008116620243,0,0,0.438450885253763,1.15755106853338,1.31178950409327,1.21746226177622,1.239293992399,0.563391205064483,7.17056761020257,1.57198465620994,0,1.41904425628239,0.211107635297664,0,4.55367808518858,1.39973888097993,2.21310859268678,0,0,0,2.15252686335615,3.36942951335251,1.33029046061003,4.36474460393223,0,0,0,0,0,0,0,0,6.72991648103081,0,0.490080431962063,0,0,0,0,0.997896857164083,0,1.48171507906718,0,0.56159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| ||
|short_description=p10@HMGA2 | |||
}} | }} |
Latest revision as of 23:17, 19 September 2015
Short description: | p10@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | -65bp_to_ENST00000354636, ENST00000393578, ENST00000425208, ENST00000536545, ENST00000537275, ENST00000537429, NM_003483, NM_003484, uc001sss.1, uc001sst.1, uc001ssu.1, uc001ssv.2, uc001ssw.1, uc001ssx.2, uc010ssv.1_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | Q1M182Q1M188Q1M186F5H6H0Q1M187Q1M185P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.34e-16 | 250 |
epithelial cell | 1.03e-13 | 253 |
epithelial cell of nephron | 1.31e-08 | 15 |
kidney cell | 2.96e-08 | 17 |
kidney epithelial cell | 2.96e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.98e-13 | 309 |
epithelium | 2.89e-12 | 306 |
unilaminar epithelium | 5.05e-09 | 148 |
mesenchyme | 9.25e-09 | 160 |
entire embryonic mesenchyme | 9.25e-09 | 160 |
nephron epithelium | 1.31e-08 | 15 |
renal tubule | 1.31e-08 | 15 |
nephron tubule | 1.31e-08 | 15 |
nephron | 1.31e-08 | 15 |
uriniferous tubule | 1.31e-08 | 15 |
nephrogenic mesenchyme | 1.31e-08 | 15 |
pigment epithelium of eye | 2.46e-08 | 11 |
camera-type eye | 5.06e-08 | 20 |
simple eye | 5.06e-08 | 20 |
immature eye | 5.06e-08 | 20 |
ocular region | 5.06e-08 | 20 |
eyeball of camera-type eye | 5.06e-08 | 20 |
optic cup | 5.06e-08 | 20 |
optic vesicle | 5.06e-08 | 20 |
eye primordium | 5.06e-08 | 20 |
epithelial tube | 8.47e-08 | 117 |
excretory tube | 8.47e-08 | 16 |
kidney epithelium | 8.47e-08 | 16 |
trunk | 9.02e-08 | 199 |
trunk region element | 1.69e-07 | 101 |
ectodermal placode | 1.75e-07 | 31 |
eye | 2.11e-07 | 21 |
visual system | 2.11e-07 | 21 |
embryo | 4.37e-07 | 592 |
head | 6.03e-07 | 56 |
face | 7.65e-07 | 22 |