FFCP PHASE1:Hg19::chr12:66218413..66218418,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:66218413..66218418,+
|short_description=p17@HMGA2
|description=CAGE_peak_17_at_HMGA2_5end
|association_with_transcript=-172bp_to_ENST00000545998_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-172bp_to_ENST00000545998_5end | |||
|cluster_id=chr12:66218413..66218418,+ | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_17_at_HMGA2_5end | |||
|id=chr12:66218413..66218418,+ | |||
|ontology_enrichment_celltype=CL:0002321!1.19e-12!248;CL:0000055!1.44e-12!180;CL:0000066!4.05e-12!254;CL:0000220!8.96e-12!246;CL:0000548!1.21e-11!679;CL:0000004!1.21e-11!679;CL:0000255!1.21e-11!679;CL:0000012!2.68e-11!682;CL:0002371!1.91e-07!591;CL:0000003!4.53e-07!722;CL:0000183!6.01e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.02e-08;15!CL:0002322;7.22e-08;5!CL:1000497;1.28e-07;17!CL:0002518;1.28e-07;17!CL:0002188;2.12e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,1.24e-08,15;CL:0002322,6.62e-08,5;CL:1000497,1.53e-07,17;CL:0002518,1.53e-07,17;CL:0002188,2.09e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!6.77e-13!143;UBERON:0002100!7.40e-09!216;UBERON:0003104!1.01e-08!238;UBERON:0009142!1.01e-08!238;UBERON:0000119!8.18e-08!312;UBERON:0000914!1.06e-07!83;UBERON:0002329!1.06e-07!83;UBERON:0003077!1.06e-07!83;UBERON:0003059!1.06e-07!83;UBERON:0007282!1.06e-07!83;UBERON:0009618!1.06e-07!83;UBERON:0007285!1.06e-07!83;UBERON:0000475!1.83e-07!365;UBERON:0000483!1.94e-07!309;UBERON:0003914!2.04e-07!118;UBERON:0000481!2.55e-07!347;UBERON:0000486!2.91e-07!82;UBERON:0000922!5.79e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.02e-08;15!UBERON:0004819;1.02e-08;15!UBERON:0001285;1.02e-08;15!UBERON:0007684;1.02e-08;15!UBERON:0002113;4.37e-07;24!UBERON:0011143;4.37e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.24e-08,15;UBERON:0009773,1.24e-08,15;UBERON:0001231,1.24e-08,15;UBERON:0001285,1.24e-08,15;UBERON:0007684,1.24e-08,15;UBERON:0004208,1.24e-08,15;UBERON:0006555,4.71e-08,16;UBERON:0004819,4.71e-08,16;UBERON:0005172,9.90e-08,54;UBERON:0005173,9.90e-08,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,1.39560233594486,0.218441372130172,0.263766978228454,0,0.331397375727916,0,0.602694528023977,0,0,0.123121058076788,0,0,0,0.136874425072884,0.376627918784408,0,0.0821005894499457,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.945348171640679,0.443458794925128,0.527008714158756,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.550236083880135,0.417989933073621,0.516833518338658,0.35576626268671,0,0.402829317109147,0,0,0,0,0.357198913136319,0.44905874525234,0.563057402416611,0,0,0,0,0,0.436094052142534,0,0.25326102332916,0.132409180813219,0,0.354668382198357,0.560677600142307,0,0,0,0.269421344139376,0.326923806226917,0.151357427644931,0.576175924479999,0.234321431833797,0.312160076830321,0,0.448346041655403,0.587172493218824,1.78060238804945,1.68540968042698,0.204154171254893,0.491337269247072,0.103325781175765,0,0,0,0,0.841680569770331,1.37630371859161,1.38532057742091,0.438977620880838,0,0.300476117813194,0.340296549480063,0.538168907066586,0,0,0.600182192168805,0.206105058476878,0,0.18611685633159,0.168776332241266,0,0,0.0920498986422993,0,0,0.10075209822764,0.169560592310488,0.386521706326594,0.272746120590835,0,1.58565817968474,2.12047629314376,0.929551542956147,0.518305275076852,2.52320850875628,1.45990943630332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4763109092493,0,0,0,0,0,0,0,0.122988438543114,0.171567810298526,0.219500570817251,0,0.201057944823262,2.12953423864618,0,0,0,0.231860809950154,0.234817388471643,0,0.462985512576611,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0.560655421726804,0,0.36669142910475,0.904902010304444,0,0,0.26593811658487,0,0.514414748524284,4.25547396069835,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,1.42636905040718,0,0.821905290201534,0.358121926479791,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.24538298343828,0.500170521059677,0,0,0,0,0.234282829985426,0,0,0,0,0.368738337083406,0.434418072340414,0.979005787313703,0.686286847621712,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0.616838775210622,0,0.328508624055237,0,0.348631135379878,0.362578348774867,0.200506470303285,0.276242966807689,0.114814448164607,0,0,0.451199612907412,1.07821471946181,0,2.92278449306521,1.26661954671451,1.13733384070897,0,0.431831832204279,1.54227252690289,0.541892875087706,0.501689773854853,0.509752546090077,0,0,0,0,1.28225062558195,0.984043937099117,0.325378394664303,0,0.27470839445503,0,0,0,0,0.290012154876366,0.462145851343933,0.460511024178389,0.689182862422653,0.107420244868274,0.145016693914229,0.340906509664404,0.0890320356467374,0.330569830721956,0.192190067365106,1.27612712494584,0.10115778085555,0,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0.55597265731176,0,0,0,0.190630193923825,1.27948895655667,0.42793898803392,0,0,0,0.274537029736055,0.235624804691373,0.404364963146632,0,0,0,0.487426979262569,1.05650146756755,0,0,0,0,0.66343897524122,0.438450885253763,1.15755106853338,0,0.202910376962704,0.30982349809975,0.281695602532241,1.43411352204052,0.392996164052485,0.7133421029625,0,0,0,0.75894634753143,0,0.384888450902048,0,0,0,0.43050537267123,0,0,0.918893600827838,0,0,0,0,0,0,0,0,3.31154620495167,0,0.980160863924127,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0,3.15537356548735,0,0.568272293612826,0,0,0,0,0,0.445234820091624,0,0,0,0,0,0.102268682502155,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,2.27586896570999,0.254253650292766,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47698645169619,0.326465616318295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0.661983911750998,0.313932918407225,0,4.26914319044689,0.554698692052555,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,0,0.882561266915003,0,0.822251547880505,4.76915068087175,0,0,0.400794101257669,0,0,0.288180834308212,2.1761953271524,0,0,1.36677789121976,0,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,1.08089965062721,1.16495949527454,0.945398187686684,1.07140615895516,0.808842526250219,0.0984274815147488,0,0,0,1.92903778158023,1.65047323916681,0.83088067605837,0,0,0,0,0,0.104909176269996,1.26720403823288,0,0.383830394638891,0,0,0,0,0,0.653174720218818,0,0,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10678907948985,1.62474530350739,0.303298235083296,0.285465333544967,0.941063278792687,0,0,0,0.233713309847224,0,0,0.251567901752575,0,0.228840068396924,0,0,0.295710299979268,0.318593534327405,0.449803112163605,0.310525913752519,0,0,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0.322231671127465,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0.327609848846413,0.24577290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| ||
|short_description=p17@HMGA2 | |||
}} | }} |
Latest revision as of 23:22, 19 September 2015
Short description: | p17@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_17_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | -172bp_to_ENST00000545998_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 1.24e-08 | 15 |
embryonic stem cell | 6.62e-08 | 5 |
kidney cell | 1.53e-07 | 17 |
kidney epithelial cell | 1.53e-07 | 17 |
glomerular endothelial cell | 2.09e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.24e-08 | 15 |
renal tubule | 1.24e-08 | 15 |
nephron tubule | 1.24e-08 | 15 |
nephron | 1.24e-08 | 15 |
uriniferous tubule | 1.24e-08 | 15 |
nephrogenic mesenchyme | 1.24e-08 | 15 |
excretory tube | 4.71e-08 | 16 |
kidney epithelium | 4.71e-08 | 16 |
abdomen element | 9.90e-08 | 54 |
abdominal segment element | 9.90e-08 | 54 |