FFCP PHASE2:Hg19::chr7:93204048..93204059,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:799 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:1440 |TSSclassi...") |
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| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=1440 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F5H605,P30988,A4D1G6 | ||
|association_with_transcript=-6bp_to_ENST00000359558,ENST00000360249,ENST00000426151,NM_001164737,NM_001742,uc003umw.2_5end | |association_with_transcript=-6bp_to_ENST00000359558,ENST00000360249,ENST00000426151,NM_001164737,NM_001742,uc003umw.2_5end | ||
|cluster_id=chr7:93204048..93204059,- | |cluster_id=chr7:93204048..93204059,- | ||
Latest revision as of 01:12, 20 September 2015
| Short description: | p2@CALCR |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_CALCR_5end |
| Coexpression cluster: | C224_clear_serous_pleomorphic_choriocarcinoma_mesothelioma_amniotic_renal |
| Association with transcript: | -6bp_to_ENST00000359558, ENST00000360249, ENST00000426151, NM_001164737, NM_001742, uc003umw.2_5end |
| EntrezGene: | CALCR |
| HGNC: | 1440 |
| UniProt: | F5H605P30988A4D1G6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@CALCR |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell of cervix | 1.65e-12 | 2 |
| chorionic membrane mesenchymal stem cell | 1.51e-08 | 3 |
Showing 1 to 2 of 2 entries
| Ontology term | p-value | n |
|---|---|---|
| chest muscle | 2.62e-23 | 1 |
| respiratory system muscle | 2.62e-23 | 1 |
| skeletal muscle of trunk | 2.62e-23 | 1 |
| respiratory system skeletal muscle | 2.62e-23 | 1 |
| thoracic segment muscle | 2.62e-23 | 1 |
| chest organ | 2.62e-23 | 1 |
| muscle of trunk | 2.62e-23 | 1 |
| diaphragm | 2.62e-23 | 1 |
| future diaphragm | 2.62e-23 | 1 |
| chest | 9.20e-19 | 11 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| thoracic cancer | 4.11e-23 | 4 |
| breast cancer | 4.11e-23 | 4 |
| clear cell adenocarcinoma | 1.48e-12 | 2 |
| adenocarcinoma | 1.11e-08 | 25 |
Showing 1 to 4 of 4 entries
