FFCP PHASE1:Hg19::chr12:6960407..6960464,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83461 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14624 | |||
|TSSclassifier=strong | |||
|UniProt=Q99618,F8WDL1,F5GX58,B2R749 | |||
|association_with_transcript=0bp_to_ENST00000229265,ENST00000422785,ENST00000446553,ENST00000535406,ENST00000536241,ENST00000540683,ENST00000545368,NM_031299,uc001qre.2,uc001qrg.2_5end | |||
|cluster_id=chr12:6960407..6960464,- | |||
|coexpression_cluster_id=C747 | |||
|description=CAGE_peak_1_at_CDCA3_5end | |||
|id=chr12:6960407..6960464,- | |||
|ontology_enrichment_celltype=CL:0000548!2.99e-20!679;CL:0000004!2.99e-20!679;CL:0000255!2.99e-20!679;CL:0000012!6.58e-20!682;CL:0000066!3.40e-19!254;CL:0002321!6.17e-12!248;CL:0000055!1.10e-11!180;CL:0000220!1.60e-11!246;CL:0000003!3.44e-11!722;CL:0000144!6.38e-09!625;CL:0000063!1.62e-08!578;CL:0000333!1.61e-07!41;CL:0000057!6.68e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:1000497;8.75e-08;17!CL:0002518;8.75e-08;17!CL:1000449;1.49e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.57e-19,253;CL:0002321,5.68e-12,250;CL:1000497,8.96e-08,17;CL:0002518,8.96e-08,17;CL:0000333,1.19e-07,41;CL:1000449,1.50e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.80e-32!235;DOID:14566!1.41e-30!239;DOID:0050687!1.97e-16!143;DOID:0050686!3.91e-14!137;DOID:305!3.93e-13!106;DOID:2531!4.49e-12!51;DOID:0060083!4.49e-12!51;DOID:1240!3.52e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:2531;8.77e-08;51!DOID:0060083;8.77e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.43e-32,235;DOID:14566,2.39e-30,239;DOID:0050687,2.06e-16,143;DOID:0050686,4.62e-14,137;DOID:305,3.29e-13,106;DOID:2531,3.32e-12,51;DOID:0060083,3.32e-12,51;DOID:1240,2.91e-08,39 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.49e-07;15!UBERON:0004819;1.49e-07;15!UBERON:0001285;1.49e-07;15!UBERON:0007684;1.49e-07;15!UBERON:0002113;4.08e-07;24!UBERON:0011143;4.08e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,1.50e-07,15;UBERON:0009773,1.50e-07,15;UBERON:0001231,1.50e-07,15;UBERON:0001285,1.50e-07,15;UBERON:0007684,1.50e-07,15;UBERON:0004208,1.50e-07,15;UBERON:0006555,9.27e-07,16;UBERON:0004819,9.27e-07,16 | |||
|phase1_expression=0.363356758541113,5.1384125733836,0.281908808191942,2.00146596706261,0,0,7.59899634504932,2.52687949370732,0,63.1536216808878,110.950385707616,44.5620399145551,21.8926591929616,6.31208400096238,5.30235801164665,2.01697543935533,1.20538905604795,2.92124036154949,3.90346239032406,100.466783390659,83.2322820276552,46.7047535002351,56.1022534776871,86.7783854962086,72.0614751274168,52.3431829373466,50.4097619222667,53.0510666054198,0.393364276848904,0.383829398097213,1.70297735647684,37.696270203636,28.0121504463773,8.50434223383612,87.2280678534196,65.5400161767013,14.3864215274075,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.63841583378639,0.889509253863555,4.69403244823158,0,0.574752439954483,1.32208974556972,0.954053754535364,0,0,0,0,0.560508562981536,29.7624015795837,0,0,0,3.51091640320424,0,0,0,18.3827253860536,0,0.886135578334485,0,22.4159809519932,16.2574184449848,29.5988228286617,25.7005516540839,24.6332622874795,0,0,0,31.3866879272258,0,0,0,0.318565414324097,0,0,0,0.383959833463255,1.24930726552346,0.710331756132051,0,0,0,0,0,30.8522395463673,21.225185266026,99.0343277533712,9.5254203020819,11.7325680358267,35.7878676172995,8.75942766544745,39.5155535745804,23.7250455284943,24.8572443511547,2.61958150995425,36.4295288292542,58.2131575171554,0,0.348259474598534,0,0,0.571994910780128,0,20.870052773504,25.8070378531837,28.1183806302151,14.6980064900242,11.7459842138774,31.6385748231078,36.9921090770155,3.6178346283706,5.69226020298736,5.69025041699939,15.7103433672567,9.88353737434066,6.83373761134875,25.7364156242108,8.1014194788176,33.0408994651095,32.7812884034208,39.4140181691628,42.9286584904473,26.5794384679076,22.5338145034401,0,0,37.9401825364005,1.98788780678127,25.0728413095868,0,37.2887606973458,43.9788793925963,17.9416832045538,18.1473292740498,10.853372130355,14.626918663789,14.2793312393869,43.1539424219531,12.8653813498192,1.15235184896,78.0290368006543,9.98912245857026,43.3558584373781,8.81747215255626,45.6820199724245,51.637469253434,58.5679863948376,15.9240253578817,65.4706911271723,6.92282733877629,11.8800285728205,7.41800787835671,60.9808112498478,28.7447256726495,62.4526982769586,56.8038080218717,39.343104398754,43.458784467203,23.5995602765245,13.6716633605003,48.662406575649,69.4237890115896,4.27114777637135,8.05341224406335,68.4207699072437,20.5074533184493,10.8209026819164,9.1197259602479,50.8016760046211,27.6721094657804,33.068824425979,5.33889412125336,4.20279747728911,44.0211894720602,47.5549903634462,75.793584762788,7.73043412653187,10.3643525824517,11.4721838155602,38.9096122553409,39.7589304964456,48.2204862908501,36.7996745304565,48.193282517245,40.5124868574171,21.9029345261742,16.724264393015,85.6436512385379,0.464367928031979,0,57.2604912192844,57.3187946265546,55.1915258433174,51.9484611569575,52.7268254703623,46.2677707266638,48.8089335539795,48.2704804208351,47.7086474613524,42.8130163682296,63.1087982115506,27.5754587592038,17.641045366265,0,1.96565443335525,0.590789906681404,87.8511567835155,35.1746934233305,23.3332222005995,3.51200913307602,12.3641928583382,28.6507571373148,9.44402140617002,71.3520188629611,73.8353697548501,27.4229549848019,26.8958539542178,2.34817388471643,17.1796072835678,21.7603190911007,11.6055032863105,60.0555342449049,66.1034344813052,1.96973604869918,3.51006397708857,18.4302641238023,8.43604505880993,2.68771405118175,8.79005602902796,23.1060988573349,42.7231889615524,57.1240191956165,8.86793828212698,12.3267807618516,0.207328115540772,1.00883967391873,0.37872730027914,24.6371829853616,27.8851550657543,41.0261065235164,20.5286935227246,18.4061211938949,46.5531739658072,7.14566081576446,75.1278265113917,38.3644860573286,58.3772755134762,0.517086863031111,10.7296933755565,58.325889926364,9.30783408047047,28.0820079660688,97.738802219614,99.2943924162948,106.302449427424,5.00422977803516,0.542621605391443,83.1472740148577,46.2545381697104,6.04166312862328,74.4434760557423,0,0,5.19859554146697,0,1.00451418286425,2.10833939483032,10.5434936416296,6.89171615004683,41.3647024618083,13.75422413342,15.2052478687284,41.9002653981356,48.7570376371844,0.197030760201927,0,0,16.2620559502377,11.712586847186,16.2390650683316,12.7312361654105,10.2070200264506,0,0,0,0.981531933753119,6.5022167737758,6.51036056879365,3.95144636908534,14.4527480925701,6.93890626149313,10.7770101793296,0,0,5.17365356462525,55.7949502769767,36.6894645397989,29.8010797625524,9.79005787313703,7.54915532383883,0,0.215714200818617,0.106727557803444,20.6126748583456,49.9306318531491,48.3824469327488,0.496215615637554,5.37116906508219,2.52594084989766,1.02511319404561,9.21073048320066,0.160853921143607,2.96836132889982,42.2534561019276,21.1298453122621,34.7397869938413,18.6931594506104,34.3982720241479,38.070726621361,2.6065841139427,0.184161977871793,54.1924195336944,74.8394700507607,3.2781103739856,55.4975523876116,20.2550336584611,130.202061683358,81.837965805826,18.9992932007176,63.6906950797021,44.5645507824471,55.4903904382498,67.8599911837273,61.7757877599984,37.1250432652592,74.6787480021962,39.06057241965,82.3859097377616,93.4047074511681,84.9665215830927,46.9303728962992,40.3458014210638,3.57916234130733,1.95777922130672,21.610393697129,23.5977169772882,9.18824860793876,5.85054221432869,25.7094287750655,6.38026740728005,33.7366471481071,37.1478892837234,44.7968860574724,19.6579048108941,23.9277544958477,45.6814722950301,11.3070685271356,0.991709492165869,3.45942121257191,15.1859127868555,0.10115778085555,5.57814659156743,1.5740617341532,18.8200062943362,9.24100740528266,17.0337929701447,14.7888608652762,2.03856641014312,3.86437194203376,24.9346107470977,21.8301803055921,5.14701523594327,72.4190749411075,0,18.4557883797043,14.9140241637854,16.1885211824983,22.5120364383565,30.04216259815,14.7593211548521,0,13.4802705996474,109.229957556068,1.46228093778771,14.7910205459458,31.3949796238367,6.6460553018245,6.78048699721457,40.8010354224132,13.2687795048244,1.31535265576129,19.0995926308007,7.87073702455959,9.13096696332168,28.1939383270773,31.8316030861433,39.2947105039101,4.61770492761669,10.3434604929563,58.180814507578,3.37772216476263,5.26871828735843,130.15929860164,76.9856384538962,16.6464255015136,22.7902773682168,11.9780083347455,0.847294206991012,8.6101074534246,11.7930032967338,6.65145230305014,1.1486170010348,0,0,1.13929437434833,0.238231775457789,0,0,0,0,42.8364525221167,0.962479855263359,63.9554963710493,57.4131811138471,70.1148375065522,62.4625384599076,41.6102571822226,45.1049379438166,29.3003216302521,15.6638451215673,10.0632801485112,14.6014532618999,18.7152436807218,44.3404105037656,27.5697924799074,28.4410186706694,39.5046664755101,35.7185481728154,29.8092366383228,37.4420825783784,16.2837605083483,23.7096674365961,21.6903884225481,68.1904452953121,68.2095126043344,34.4644717053595,36.7819722727337,43.2993558397166,18.3283106614204,31.6267513289891,1.02555725490326,28.1556410458871,36.2190998901805,73.0229897292482,0.23874448473769,34.7448676574187,0.307160702099232,0,0,2.22617410045812,58.5053753504996,26.1795506078712,0,19.6161580027115,16.3756286105279,33.7486652257111,35.448423972788,3.11039587661807,63.7166609634547,4.83357171624145,37.3447830265616,0.295930216910801,2.3948309234694,45.5661659593011,0,0.0927680981618513,7.98455192004777,22.6572152144153,5.68489999975272,2.17499872630438,34.0242410373644,17.7977555204936,36.1673153104943,44.8166385213904,55.4048765428183,27.6063741943935,0,0,0,0,0,0,41.1787392101783,13.6635269393031,0.615602068030377,4.89950840142105,33.8928939450448,58.9707723772203,34.0066274115885,0.957003479195758,12.5488702960551,1.5991043280559,75.623040664845,24.6459002540189,21.4413069651202,36.7720926806005,34.8991311085576,36.5851059607337,48.5769555773914,16.8472773719201,70.051357423305,46.0316519008797,100.502033789532,35.704125557445,14.9289289661776,4.5113357896703,9.77648231893801,32.0242818975072,35.3392865386998,34.5636652863057,0.067401132980677,2.40773294189637,0,71.5222773725411,50.2858070655471,14.8096031515797,0,7.25944296291983,7.65181904076225,4.23350083510869,54.4170778280463,82.639488543606,10.634461963315,10.591742588016,9.10405463380953,17.9208644659438,3.13070500632772,22.6039717011416,33.3234697603451,34.6893086846897,47.5343267928998,1.57254001417827,22.1861981888385,55.5381341599349,30.6975131761979,50.4188906306705,5.72235197281675,3.08896443420251,1.35588444468319,22.8860014160074,58.024666617273,0,20.7284465698891,12.0238230377301,2.34798294213288,13.786863061167,13.6885896296401,23.5945388101786,16.9879047883345,0.14405479798815,3.97608113809384,17.4413585616429,20.2497267049685,22.8034204960886,58.648975140885,8.09061651724253,0,0.136905378891993,22.994385852055,29.2240500165571,32.0722572220764,0.837847203816763,0.229160424011684,0,10.9823450274445,0.429226048136571,0.446342914883745,9.27131920316822,1.80149941771202,32.6188658676871,44.1185820920452,38.9827010142917,40.5095298563651,12.6971451154026,62.9122857248779,0,0,47.1006725002506,39.1987394302116,32.4043463662764,3.37460837327251,4.6428117273477,0.0607495566580247,38.9104237615149,0.551639951094387,5.5601863423098,3.48481110514041,2.15144807199414,30.1306859791529,2.1440859791201,2.64836788146173,50.3451704556405,0.542999601753713,0,11.4305576038293,35.9190574687462,18.4708171686013,21.9800548103194,42.4920343200471,0,17.2258955585888,0,0.13223260174269,15.2267285717053,36.6503811604669,2.13574825135389,1.57204305099666,0.828478110694391,0.992332043623902,50.1933545020778,42.7492020316945,16.5968727020247,0,0,0,0,14.6060309512718,0,0,0.1251909307065,0.573409195690071,0.221858103073705,0.124192805882767,63.3636748007937,46.4927117619037,17.1363502822062,6.56570267153425,4.9405822136616,44.4918160516538,52.4614123571187,13.1344226540449,9.11481908404175,13.8701465375653,3.59865710022669,2.76724691927833,2.66943366478961,0,4.08323494160745,20.2068360757615,23.9525342983207,14.6553025790606,0.449803112163605,12.7315624638533,12.4411862352257,3.19010057469594,2.60872530905867,3.75644022493046,2.28483127301277,25.225985458689,7.6376436865075,6.33722286550682,0.928067519756987,3.58286299828754,109.607607517704,10.6452668606666,8.41873721914798,11.3566408405786,18.1062640582865,17.1553273099941,25.0554520286603,68.4651895047063,23.6152923810311,37.1999790849831,35.1014128519715,61.1426865378725,35.7433000813293,74.9161978810536,60.5750080170672,51.6963868398402,38.1799862696041,99.8293687603164,35.8554748289311,0.138258436151731,0,0.664324201566815,0.163565394255844,12.1215644073173,61.4432271884298,10.9882304146486,27.9982354196902,31.1539850706891,16.7048530270991,55.0490474959831,36.6370841001163,0,3.11038630016486,8.05734539213006,61.2444928733153,33.6549115571618,16.8182842815701,35.4740987603913,7.86527204376227,34.5780782282616,29.0495357346087,15.5822131820175,60.6446819059638,34.4245421762752,13.7543618039367,10.1061007526556,0.0642292250964595,0,0.159633859057151,0,2.7727886584389,0.0691572524642179,0,0,11.581430783121,29.9643097303261,20.544003034428,20.2169915763092,32.7988602101764,15.8782782993823,21.8807844327902,0.376051641746286,31.6676957864526,0,19.9049087805881,41.2705232125444,13.8984721044023,0,0,0.206686796501184,0,9.84554656232795,0,1.48863353516788,8.44181972926179,20.0587011394165,0,0.336283722218824,0.606965604236632,0,3.72549954683083,42.6365753956383,42.3575383310424,0.0679697329768317,0.0657727735628491,72.9255998254084,28.1415446786935,0.549451649953598,0,22.1415009017893,18.2631744101899,43.1855182437243,22.4543293306914,0.0714765441766563,33.498885687338,49.2863643560851,68.1524427426111,8.81882501203278,4.97318793991288,3.0729325876911,0,2.15113679410139,7.09992004383392,5.87972492838188,0,29.5547860421825,6.51433409895072,24.8440124134133,10.2906997253969,39.2600934460972,47.4260728181028,0,0.205325613712494,12.7579587447202,7.28566489588709,64.8012313790033,21.088782167105,17.1244930719699,37.8369374830516,30.5634636552293,15.3982100438007,5.32501690944818,10.272299343686,1.88126918544609,0.245148321753905,0.942706188406504,0,0.297046400327086,4.6492130034174,13.934023404401,4.88716373495239,9.08856220427438,31.8812287400523,18.2125017377771,13.0571102534806,3.69110286770174,5.84269110597214,0.917458566809082,0.143339583151451,35.9719161800461,0,7.41796173578642,3.7031878836078,28.2716213806731,3.69740502905135,21.6313281061895,41.634920195576,37.5873567555113,164.83474981588,63.8450074184806,77.225830121747,17.9195054092948,67.9417431482337,9.16922248440697,8.30688803484153,0,0,4.05144565611864,12.1412860046508,42.305735942584,29.7337881477159,25.5660646683799,0.190941474834495,3.03175783437329,8.92638666377542,3.08009970976753,12.9315941788008,1.43444410785353,3.65926392200615,21.7346727191302,46.9600321861948,27.0301195201716,1.88632924423832,4.69281884806909,0.855690109280065,10.5793006362092,0,6.84330898209489,33.018554707233 | |||
|short_description=p1@CDCA3 | |||
}} |
Latest revision as of 05:02, 20 September 2015
Short description: | p1@CDCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDCA3_5end |
Coexpression cluster: | C747_Mesenchymal_alveolar_Trabecular_Alveolar_carcinoid_Renal_chronic |
Association with transcript: | 0bp_to_ENST00000229265, ENST00000422785, ENST00000446553, ENST00000535406, ENST00000536241, ENST00000540683, ENST00000545368, NM_031299, uc001qre.2, uc001qrg.2_5end |
EntrezGene: | CDCA3 |
HGNC: | 14624 |
UniProt: | Q99618F8WDL1F5GX58B2R749 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.57e-19 | 253 |
embryonic cell | 5.68e-12 | 250 |
kidney cell | 8.96e-08 | 17 |
kidney epithelial cell | 8.96e-08 | 17 |
migratory neural crest cell | 1.19e-07 | 41 |
epithelial cell of nephron | 1.50e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 1.50e-07 | 15 |
renal tubule | 1.50e-07 | 15 |
nephron tubule | 1.50e-07 | 15 |
nephron | 1.50e-07 | 15 |
uriniferous tubule | 1.50e-07 | 15 |
nephrogenic mesenchyme | 1.50e-07 | 15 |
excretory tube | 9.27e-07 | 16 |
kidney epithelium | 9.27e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.43e-32 | 235 |
disease of cellular proliferation | 2.39e-30 | 239 |
cell type cancer | 2.06e-16 | 143 |
organ system cancer | 4.62e-14 | 137 |
carcinoma | 3.29e-13 | 106 |
hematologic cancer | 3.32e-12 | 51 |
immune system cancer | 3.32e-12 | 51 |
leukemia | 2.91e-08 | 39 |