FFCP PHASE1:Hg19::chr20:19870145..19870166,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:19870145..19870166,+ to FFCP PHASE1:Hg19::chr20:19870145..19870166,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54453 | |EntrezGene=54453 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18750 | |HGNC=18750 | ||
|TSSclassifier=strong | |||
|UniProt=E7EPJ1,A1A4T0,Q8WYP3 | |UniProt=E7EPJ1,A1A4T0,Q8WYP3 | ||
|association_with_transcript=-43bp_to_ENST00000440354,ENST00000465815,NM_018993,uc002wro.1,uc010gcu.1_5end | |||
|cluster_id=chr20:19870145..19870166,+ | |||
|description=CAGE_peak_18_at_RIN2_5end | |||
|id=chr20:19870145..19870166,+ | |||
|ontology_enrichment_celltype=CL:0002139!5.52e-12!24;CL:0000071!2.78e-10!18;CL:0002546!2.78e-10!18;CL:0000115!7.39e-09!35;CL:0002078!1.65e-07!44 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;4.33e-11;4!UBERON:0007284;4.33e-11;4!UBERON:0004872;7.67e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.90e-38!115;UBERON:0000477!1.70e-19!286;UBERON:0004111!1.74e-19!241;UBERON:0001049!1.90e-18!57;UBERON:0005068!1.90e-18!57;UBERON:0006241!1.90e-18!57;UBERON:0007135!1.90e-18!57;UBERON:0003080!7.92e-18!42;UBERON:0000025!1.36e-17!194;UBERON:0002616!3.28e-17!59;UBERON:0002780!6.32e-17!41;UBERON:0001890!6.32e-17!41;UBERON:0006240!6.32e-17!41;UBERON:0003075!1.59e-16!86;UBERON:0007284!1.59e-16!86;UBERON:0000955!2.09e-15!69;UBERON:0006238!2.09e-15!69;UBERON:0002346!3.80e-15!90;UBERON:0001017!1.45e-14!82;UBERON:0002020!2.37e-14!34;UBERON:0003528!2.37e-14!34;UBERON:0005743!2.91e-14!86;UBERON:0001893!4.19e-14!34;UBERON:0001869!8.47e-14!32;UBERON:0002791!1.76e-13!33;UBERON:0002619!2.39e-13!22;UBERON:0003056!1.12e-12!61;UBERON:0000073!2.67e-12!94;UBERON:0001016!2.67e-12!94;UBERON:0000119!5.54e-12!312;UBERON:0001950!1.46e-11!20;UBERON:0000483!1.98e-11!309;UBERON:0000055!2.49e-11!69;UBERON:0002049!3.03e-11!79;UBERON:0007798!3.03e-11!79;UBERON:0000956!3.96e-11!25;UBERON:0000203!3.96e-11!25;UBERON:0000153!6.64e-11!129;UBERON:0007811!6.64e-11!129;UBERON:0001981!1.38e-10!60;UBERON:0007500!1.38e-10!60;UBERON:0004537!1.38e-10!60;UBERON:0006965!1.38e-10!60;UBERON:0001986!2.78e-10!18;UBERON:0004638!2.78e-10!18;UBERON:0004852!2.78e-10!18;UBERON:0004872!4.66e-10!84;UBERON:0000033!7.68e-10!123;UBERON:0000467!1.70e-09!625;UBERON:0000480!2.06e-09!626;UBERON:0000468!3.80e-08!659;UBERON:0004121!6.25e-08!169;UBERON:0000487!1.15e-07!22;UBERON:0001009!1.52e-07!113;UBERON:0004535!1.52e-07!110;UBERON:0000924!2.04e-07!173;UBERON:0006601!2.04e-07!173;UBERON:0000475!2.53e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002133;3.28e-21;2!UBERON:0002106;8.16e-15;3!UBERON:0003978;1.78e-14;3!UBERON:0000946;1.78e-14;3!UBERON:0002134;1.06e-11;1!UBERON:0005208;1.06e-11;1!UBERON:0004145;1.06e-11;1!UBERON:0005946;1.06e-11;1!UBERON:0005965;1.06e-11;1!UBERON:0002078;1.06e-11;1!UBERON:0001874;2.81e-11;1!UBERON:0000996;2.81e-11;1!UBERON:0002135;2.81e-11;1!UBERON:0002171;2.81e-11;1!UBERON:0006518;2.81e-11;1!UBERON:0008949;2.81e-11;1!UBERON:0000101;2.81e-11;1!UBERON:0002167;2.81e-11;1!UBERON:0004177;2.99e-09;5!UBERON:0005057;2.99e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002133,4.25e-21,2;UBERON:0002106,8.19e-15,3;UBERON:0004854,8.19e-15,3;UBERON:0009034,8.19e-15,3;UBERON:0002095,8.19e-15,3;UBERON:0004782,8.19e-15,3;UBERON:0003281,8.19e-15,3;UBERON:0009664,8.19e-15,3;UBERON:0002296,8.19e-15,3;UBERON:0005602,8.19e-15,3;UBERON:0001179,8.19e-15,3;UBERON:0006293,8.19e-15,3;UBERON:0003978,2.12e-14,3;UBERON:0009751,2.12e-14,3;UBERON:0000946,2.12e-14,3;UBERON:0002523,2.12e-14,3;UBERON:0005983,2.12e-14,3;UBERON:0002165,2.12e-14,3;UBERON:0002062,2.12e-14,3;UBERON:0007280,2.12e-14,3;UBERON:0002134,9.57e-12,1;UBERON:0005208,9.57e-12,1;UBERON:0005946,9.57e-12,1;UBERON:0005965,9.57e-12,1;UBERON:0002078,9.57e-12,1;UBERON:0000996,1.97e-11,1;UBERON:0002171,2.42e-11,1;UBERON:0006518,2.42e-11,1;UBERON:0008949,2.42e-11,1;UBERON:0000101,2.42e-11,1;UBERON:0002167,2.42e-11,1;UBERON:0002135,4.01e-11,1;UBERON:0001874,4.91e-11,1;UBERON:0007023,5.76e-09,114;UBERON:0003887,3.25e-08,12;UBERON:0004177,7.68e-07,7;UBERON:0005057,7.68e-07,7 | |||
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| ||
|short_description=p18@RIN2 | |||
}} | }} |
Latest revision as of 16:09, 24 September 2015
Short description: | p18@RIN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_18_at_RIN2_5end |
Coexpression cluster: | NA |
Association with transcript: | -43bp_to_ENST00000440354, ENST00000465815, NM_018993, uc002wro.1, uc010gcu.1_5end |
EntrezGene: | RIN2 |
HGNC: | 18750 |
UniProt: | E7EPJ1A1A4T0Q8WYP3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
atrioventricular valve | 4.25e-21 | 2 |
spleen | 8.19e-15 | 3 |
gastrointestinal system mesentery | 8.19e-15 | 3 |
stomach region | 8.19e-15 | 3 |
mesentery | 8.19e-15 | 3 |
gastrointestinal system serosa | 8.19e-15 | 3 |
mesentery of stomach | 8.19e-15 | 3 |
gut mesentery | 8.19e-15 | 3 |
dorsal mesentery | 8.19e-15 | 3 |
dorsal mesogastrium | 8.19e-15 | 3 |
peritoneal cavity | 8.19e-15 | 3 |
spleen primordium | 8.19e-15 | 3 |
valve | 2.12e-14 | 3 |
cardiac mesenchyme | 2.12e-14 | 3 |
cardial valve | 2.12e-14 | 3 |
tunica intima | 2.12e-14 | 3 |
heart layer | 2.12e-14 | 3 |
endocardium | 2.12e-14 | 3 |
endocardial cushion | 2.12e-14 | 3 |
presumptive endocardium | 2.12e-14 | 3 |
tricuspid valve | 9.57e-12 | 1 |
right atrium valve | 9.57e-12 | 1 |
outflow tract of atrium | 9.57e-12 | 1 |
outflow part of right atrium | 9.57e-12 | 1 |
right cardiac atrium | 9.57e-12 | 1 |
vagina | 1.97e-11 | 1 |
lower lobe of right lung | 2.42e-11 | 1 |
right lung lobe | 2.42e-11 | 1 |
lower lobe of lung | 2.42e-11 | 1 |
lobe of lung | 2.42e-11 | 1 |
right lung | 2.42e-11 | 1 |
mitral valve | 4.01e-11 | 1 |
putamen | 4.91e-11 | 1 |
adult organism | 5.76e-09 | 114 |
intraembryonic coelom | 3.25e-08 | 12 |
hemopoietic organ | 7.68e-07 | 7 |
immune organ | 7.68e-07 | 7 |