FFCP PHASE1:Hg19::chr7:99797848..99797861,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10734 | |EntrezGene=10734 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11356 | |HGNC=11356 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=78bp_to_ENST00000479359_5end | |association_with_transcript=78bp_to_ENST00000479359_5end | ||
|cluster_id=chr7:99797848..99797861,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_6_at_STAG3_5end | |description=CAGE_peak_6_at_STAG3_5end | ||
|id=chr7:99797848..99797861,+ | |id=chr7:99797848..99797861,+ | ||
|ontology_enrichment_celltype=CL:0000945!5.94e-37!24;CL:0000826!5.94e-37!24;CL:0000236!1.83e-25!14;CL:0000542!4.21e-15!53;CL:0000051!4.21e-15!53;CL:0000838!5.93e-14!52;CL:0000037!6.82e-13!172;CL:0000566!6.82e-13!172;CL:0002032!4.52e-12!165;CL:0000837!4.52e-12!165;CL:0000738!7.16e-12!140;CL:0000988!1.30e-11!182;CL:0002087!2.30e-11!119;CL:0000451!3.87e-10!10;CL:0000990!2.30e-09!8;CL:0002031!6.48e-09!124 | |ontology_enrichment_celltype=CL:0000945!5.94e-37!24;CL:0000826!5.94e-37!24;CL:0000236!1.83e-25!14;CL:0000542!4.21e-15!53;CL:0000051!4.21e-15!53;CL:0000838!5.93e-14!52;CL:0000037!6.82e-13!172;CL:0000566!6.82e-13!172;CL:0002032!4.52e-12!165;CL:0000837!4.52e-12!165;CL:0000738!7.16e-12!140;CL:0000988!1.30e-11!182;CL:0002087!2.30e-11!119;CL:0000451!3.87e-10!10;CL:0000990!2.30e-09!8;CL:0002031!6.48e-09!124 | ||
|ontology_enrichment_celltype_v019=CL:0000236;2.10e-81;13!CL:0000945;8.57e-44;24!CL:0000542;2.41e-16;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.52e-75,14;CL:0000945,8.59e-44,24;CL:0000826,8.59e-44,24;CL:0000838,8.86e-20,52;CL:0000542,2.17e-19,53;CL:0000051,2.17e-19,53;CL:0002087,2.40e-10,115;CL:0002031,7.19e-10,120;CL:0000738,1.41e-08,136;CL:0002032,4.58e-07,161;CL:0000837,4.58e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000051;2.41e-16;53!UBERON:0006298;1.84e-14;1!UBERON:0004872;1.32e-08;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002106!2.85e-08!3;UBERON:0004854!2.85e-08!3;UBERON:0009034!2.85e-08!3;UBERON:0002095!2.85e-08!3;UBERON:0004782!2.85e-08!3;UBERON:0003281!2.85e-08!3;UBERON:0009664!2.85e-08!3;UBERON:0002296!2.85e-08!3;UBERON:0005602!2.85e-08!3;UBERON:0001179!2.85e-08!3;UBERON:0006293!2.85e-08!3;UBERON:0007023!2.85e-08!115 | |ontology_enrichment_uberon=UBERON:0002106!2.85e-08!3;UBERON:0004854!2.85e-08!3;UBERON:0009034!2.85e-08!3;UBERON:0002095!2.85e-08!3;UBERON:0004782!2.85e-08!3;UBERON:0003281!2.85e-08!3;UBERON:0009664!2.85e-08!3;UBERON:0002296!2.85e-08!3;UBERON:0005602!2.85e-08!3;UBERON:0001179!2.85e-08!3;UBERON:0006293!2.85e-08!3;UBERON:0007023!2.85e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0002106;7.93e-19;3!UBERON:0000029;1.84e-14;1!UBERON:0001736;1.84e-14;1!UBERON:0004177;1.09e-11;5!UBERON:0005057;1.09e-11;5!UBERON:0001829;7.03e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,9.50e-19,3;UBERON:0004854,9.50e-19,3;UBERON:0009034,9.50e-19,3;UBERON:0002095,9.50e-19,3;UBERON:0004782,9.50e-19,3;UBERON:0003281,9.50e-19,3;UBERON:0009664,9.50e-19,3;UBERON:0002296,9.50e-19,3;UBERON:0005602,9.50e-19,3;UBERON:0001179,9.50e-19,3;UBERON:0006293,9.50e-19,3;UBERON:0000029,1.61e-14,1;UBERON:0001736,1.84e-14,1;UBERON:0006298,1.84e-14,1;UBERON:0004177,1.42e-08,7;UBERON:0005057,1.42e-08,7;UBERON:0001829,7.03e-08,2;UBERON:0000945,1.31e-07,8;UBERON:0010039,1.31e-07,8 | |||
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| ||
|short_description=p6@STAG3 | |short_description=p6@STAG3 | ||
}} | }} |
Latest revision as of 17:57, 24 September 2015
Short description: | p6@STAG3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_STAG3_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 78bp_to_ENST00000479359_5end |
EntrezGene: | STAG3 |
HGNC: | 11356 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.52e-75 | 14 |
lymphocyte of B lineage | 8.59e-44 | 24 |
pro-B cell | 8.59e-44 | 24 |
lymphoid lineage restricted progenitor cell | 8.86e-20 | 52 |
lymphocyte | 2.17e-19 | 53 |
common lymphoid progenitor | 2.17e-19 | 53 |
nongranular leukocyte | 2.40e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 7.19e-10 | 120 |
leukocyte | 1.41e-08 | 136 |
hematopoietic oligopotent progenitor cell | 4.58e-07 | 161 |
hematopoietic multipotent progenitor cell | 4.58e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
spleen | 9.50e-19 | 3 |
gastrointestinal system mesentery | 9.50e-19 | 3 |
stomach region | 9.50e-19 | 3 |
mesentery | 9.50e-19 | 3 |
gastrointestinal system serosa | 9.50e-19 | 3 |
mesentery of stomach | 9.50e-19 | 3 |
gut mesentery | 9.50e-19 | 3 |
dorsal mesentery | 9.50e-19 | 3 |
dorsal mesogastrium | 9.50e-19 | 3 |
peritoneal cavity | 9.50e-19 | 3 |
spleen primordium | 9.50e-19 | 3 |
lymph node | 1.61e-14 | 1 |
submandibular gland | 1.84e-14 | 1 |
submandibular gland primordium | 1.84e-14 | 1 |
hemopoietic organ | 1.42e-08 | 7 |
immune organ | 1.42e-08 | 7 |
major salivary gland | 7.03e-08 | 2 |
stomach | 1.31e-07 | 8 |
food storage organ | 1.31e-07 | 8 |