FFCP PHASE1:Hg19::chrX:26766039..26766048,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=13321 | |HGNC=13321 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-97bp_to_ENST00000374117,ENST00000415560_5end | |association_with_transcript=-97bp_to_ENST00000374117,ENST00000415560_5end | ||
|cluster_id=chrX:26766039..26766048,+ | |||
|description=CAGE_peak_1_at_HMGA1P1_5end | |description=CAGE_peak_1_at_HMGA1P1_5end | ||
|id=chrX:26766039..26766048,+ | |id=chrX:26766039..26766048,+ | ||
|ontology_enrichment_celltype=CL:0000012!1.07e-22!682;CL:0000548!6.27e-22!679;CL:0000004!6.27e-22!679;CL:0000255!6.27e-22!679;CL:0000066!5.55e-20!254;CL:0002321!2.55e-18!248;CL:0000220!1.24e-17!246;CL:0000003!3.45e-16!722;CL:0000144!5.79e-15!625;CL:0002371!6.12e-11!591;CL:0000222!1.49e-09!119;CL:1000449!1.76e-08!16;CL:1000507!9.92e-08!12;CL:1000494!9.92e-08!12;CL:0000071!1.00e-07!18;CL:0002546!1.00e-07!18;CL:0002139!2.48e-07!24;CL:0000063!3.14e-07!578;CL:0002681!4.70e-07!13;CL:0002584!4.70e-07!13;CL:0000115!5.60e-07!35 | |ontology_enrichment_celltype=CL:0000012!1.07e-22!682;CL:0000548!6.27e-22!679;CL:0000004!6.27e-22!679;CL:0000255!6.27e-22!679;CL:0000066!5.55e-20!254;CL:0002321!2.55e-18!248;CL:0000220!1.24e-17!246;CL:0000003!3.45e-16!722;CL:0000144!5.79e-15!625;CL:0002371!6.12e-11!591;CL:0000222!1.49e-09!119;CL:1000449!1.76e-08!16;CL:1000507!9.92e-08!12;CL:1000494!9.92e-08!12;CL:0000071!1.00e-07!18;CL:0002546!1.00e-07!18;CL:0002139!2.48e-07!24;CL:0000063!3.14e-07!578;CL:0002681!4.70e-07!13;CL:0002584!4.70e-07!13;CL:0000115!5.60e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:1000449;3.15e-14;15!CL:0002681;3.37e-12;12!CL:0002584;3.37e-12;12!CL:1000497;3.58e-12;17!CL:0002518;3.58e-12;17!CL:1000507;3.78e-10;10!CL:1000494;3.78e-10;10!CL:1000746;5.11e-08;7!CL:1000612;5.11e-08;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,3.38e-14,15;CL:0002681,3.56e-12,12;CL:0002584,3.56e-12,12;CL:1000497,3.80e-12,17;CL:0002518,3.80e-12,17;CL:1000507,2.64e-10,10;CL:1000494,2.64e-10,10;CL:0002321,9.69e-10,250;CL:0000066,5.65e-08,253;CL:1000746,8.84e-08,7;CL:1000612,8.84e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!8.60e-12!118;UBERON:0000490!9.62e-10!138;UBERON:0004211!1.76e-08!16;UBERON:0001285!1.76e-08!16;UBERON:0007684!1.76e-08!16;UBERON:0003220!1.76e-08!16;UBERON:0004208!1.76e-08!16;UBERON:0001048!3.55e-08!168;UBERON:0005256!5.45e-08!143;UBERON:0002049!8.03e-08!79;UBERON:0007798!8.03e-08!79;UBERON:0009773!9.92e-08!12;UBERON:0001231!9.92e-08!12;UBERON:0004810!9.92e-08!12;UBERON:0001986!1.00e-07!18;UBERON:0004638!1.00e-07!18;UBERON:0004852!1.00e-07!18;UBERON:0000487!1.34e-07!22;UBERON:0000466!1.44e-07!126;UBERON:0006555!1.55e-07!17;UBERON:0005103!1.55e-07!17;UBERON:0000083!1.55e-07!17;UBERON:0009201!1.55e-07!17;UBERON:0004819!1.55e-07!17;UBERON:0006553!1.55e-07!17;UBERON:0003074!1.55e-07!17;UBERON:0003060!1.55e-07!17;UBERON:0000055!4.14e-07!69;UBERON:0001225!4.70e-07!13;UBERON:0008987!4.70e-07!13;UBERON:0003886!7.07e-07!63;UBERON:0001981!8.06e-07!60;UBERON:0007500!8.06e-07!60;UBERON:0004537!8.06e-07!60;UBERON:0006965!8.06e-07!60;UBERON:0003104!8.43e-07!238;UBERON:0009142!8.43e-07!238;UBERON:0000464!9.00e-07!104 | |ontology_enrichment_uberon=UBERON:0003914!8.60e-12!118;UBERON:0000490!9.62e-10!138;UBERON:0004211!1.76e-08!16;UBERON:0001285!1.76e-08!16;UBERON:0007684!1.76e-08!16;UBERON:0003220!1.76e-08!16;UBERON:0004208!1.76e-08!16;UBERON:0001048!3.55e-08!168;UBERON:0005256!5.45e-08!143;UBERON:0002049!8.03e-08!79;UBERON:0007798!8.03e-08!79;UBERON:0009773!9.92e-08!12;UBERON:0001231!9.92e-08!12;UBERON:0004810!9.92e-08!12;UBERON:0001986!1.00e-07!18;UBERON:0004638!1.00e-07!18;UBERON:0004852!1.00e-07!18;UBERON:0000487!1.34e-07!22;UBERON:0000466!1.44e-07!126;UBERON:0006555!1.55e-07!17;UBERON:0005103!1.55e-07!17;UBERON:0000083!1.55e-07!17;UBERON:0009201!1.55e-07!17;UBERON:0004819!1.55e-07!17;UBERON:0006553!1.55e-07!17;UBERON:0003074!1.55e-07!17;UBERON:0003060!1.55e-07!17;UBERON:0000055!4.14e-07!69;UBERON:0001225!4.70e-07!13;UBERON:0008987!4.70e-07!13;UBERON:0003886!7.07e-07!63;UBERON:0001981!8.06e-07!60;UBERON:0007500!8.06e-07!60;UBERON:0004537!8.06e-07!60;UBERON:0006965!8.06e-07!60;UBERON:0003104!8.43e-07!238;UBERON:0009142!8.43e-07!238;UBERON:0000464!9.00e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.15e-14;15!UBERON:0004819;3.15e-14;15!UBERON:0001285;3.15e-14;15!UBERON:0007684;3.15e-14;15!UBERON:0001225;3.37e-12;12!UBERON:0008987;3.37e-12;12!UBERON:0000353;1.26e-11;15!UBERON:0004211;3.78e-10;10!UBERON:0009773;3.78e-10;10!UBERON:0001231;3.78e-10;10!UBERON:0004810;3.78e-10;10!UBERON:0001851;2.78e-09;15!UBERON:0000074;5.11e-08;7!UBERON:0001229;5.11e-08;7!UBERON:0002113;9.95e-08;24!UBERON:0011143;9.95e-08;24 | |||
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| ||
|short_description=p1@HMGA1P1 | |short_description=p1@HMGA1P1 | ||
}} | }} |
Latest revision as of 19:19, 24 September 2015
Short description: | p1@HMGA1P1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HMGA1P1_5end |
Coexpression cluster: | NA |
Association with transcript: | -97bp_to_ENST00000374117, ENST00000415560_5end |
EntrezGene: | NA |
HGNC: | 13321 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 3.38e-14 | 15 |
kidney cortical cell | 3.56e-12 | 12 |
renal cortical epithelial cell | 3.56e-12 | 12 |
kidney cell | 3.80e-12 | 17 |
kidney epithelial cell | 3.80e-12 | 17 |
kidney tubule cell | 2.64e-10 | 10 |
nephron tubule epithelial cell | 2.64e-10 | 10 |
embryonic cell | 9.69e-10 | 250 |
epithelial cell | 5.65e-08 | 253 |
glomerular cell | 8.84e-08 | 7 |
kidney corpuscule cell | 8.84e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 3.38e-14 | 15 |
renal tubule | 3.38e-14 | 15 |
nephron tubule | 3.38e-14 | 15 |
nephron | 3.38e-14 | 15 |
uriniferous tubule | 3.38e-14 | 15 |
nephrogenic mesenchyme | 3.38e-14 | 15 |
excretory tube | 4.17e-13 | 16 |
kidney epithelium | 4.17e-13 | 16 |
cortex of kidney | 3.56e-12 | 12 |
renal parenchyma | 3.56e-12 | 12 |
parenchyma | 1.32e-11 | 15 |
nephron tubule epithelium | 2.64e-10 | 10 |
cortex | 2.89e-09 | 15 |
epithelial tube | 1.15e-08 | 117 |
primitive nephron | 8.84e-08 | 7 |
renal glomerulus | 8.84e-08 | 7 |
renal corpuscle | 8.84e-08 | 7 |
glomerular capsule | 8.84e-08 | 7 |
metanephric mesenchyme | 8.84e-08 | 7 |
glomerular tuft | 8.84e-08 | 7 |
S-shaped body | 8.84e-08 | 7 |
renal vesicle | 8.84e-08 | 7 |
comma-shaped body | 8.84e-08 | 7 |
trunk region element | 2.16e-07 | 101 |
kidney | 6.72e-07 | 26 |
kidney mesenchyme | 6.72e-07 | 26 |
upper urinary tract | 6.72e-07 | 26 |
kidney rudiment | 6.72e-07 | 26 |
kidney field | 6.72e-07 | 26 |