FFCP PHASE1:Hg19::chr22:45809465..45809492,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:45809465..45809492,- to FFCP PHASE1:Hg19::chr22:45809465..45809492,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27127 | |EntrezGene=27127 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11112 | |HGNC=11112 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NDV3 | |UniProt=Q8NDV3 | ||
|association_with_transcript=7bp_to_ENST00000404354,NM_148674,uc003bgc.2,uc003bgd.2_5end | |||
|cluster_id=chr22:45809465..45809492,- | |||
|coexpression_cluster_id=C2648 | |||
|description=CAGE_peak_1_at_SMC1B_5end | |||
|id=chr22:45809465..45809492,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;2.65e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.66e-09,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!1.46e-16!239;DOID:305!1.73e-16!106;DOID:0050687!1.95e-16!143;DOID:162!4.05e-16!235;DOID:299!2.93e-09!25;DOID:0050686!3.01e-07!137 | |||
|ontology_enrichment_disease_v019=DOID:299;3.49e-13;25!DOID:4362;6.11e-13;5!DOID:0050615;1.21e-10;16!DOID:1325;5.14e-09;7!DOID:3904;5.14e-09;7!DOID:1324;1.39e-08;15!DOID:4468;4.88e-08;2!DOID:120;1.10e-07;27!DOID:193;4.57e-07;29!DOID:3905;5.16e-07;9!DOID:0050686;7.46e-07;137!DOID:305;8.69e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,1.04e-21,137;DOID:14566,1.08e-20,239;DOID:162,4.48e-20,235;DOID:305,2.77e-16,106;DOID:299,4.85e-13,25;DOID:4362,5.76e-13,5;DOID:0050687,9.57e-13,143;DOID:0050615,9.84e-11,16;DOID:1325,4.68e-09,7;DOID:3904,4.68e-09,7;DOID:1324,1.28e-08,15;DOID:4468,7.57e-08,2;DOID:120,1.28e-07,27;DOID:193,5.26e-07,29;DOID:3905,5.29e-07,9 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000002;8.65e-11;6!UBERON:0001560;8.65e-11;6!UBERON:0006955;2.65e-09;2!UBERON:0004801;2.65e-09;2!UBERON:0000473;6.15e-08;8!UBERON:0000995;1.34e-07;17!UBERON:0003975;3.87e-07;18!UBERON:0005911;5.93e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000002,8.24e-11,6;UBERON:0001560,8.24e-11,6;UBERON:0006955,2.66e-09,2;UBERON:0004801,2.66e-09,2;UBERON:0000473,6.44e-08,8;UBERON:0003133,2.26e-07,48;UBERON:0005156,8.86e-07,59;UBERON:0000990,8.86e-07,59 | |||
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| ||
|short_description=p1@SMC1B | |||
}} | }} |
Latest revision as of 04:01, 25 September 2015
Short description: | p1@SMC1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SMC1B_5end |
Coexpression cluster: | C2648_transitionalcell_acute_testis_small_breast_argyrophil_epidermoid |
Association with transcript: | 7bp_to_ENST00000404354, NM_148674, uc003bgc.2, uc003bgd.2_5end |
EntrezGene: | SMC1B |
HGNC: | 11112 |
UniProt: | Q8NDV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.66e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine cervix | 8.24e-11 | 6 |
neck of organ | 8.24e-11 | 6 |
uterine epithelium | 2.66e-09 | 2 |
cervix epithelium | 2.66e-09 | 2 |
testis | 6.44e-08 | 8 |
reproductive organ | 2.26e-07 | 48 |
reproductive structure | 8.86e-07 | 59 |
reproductive system | 8.86e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 1.04e-21 | 137 |
disease of cellular proliferation | 1.08e-20 | 239 |
cancer | 4.48e-20 | 235 |
carcinoma | 2.77e-16 | 106 |
adenocarcinoma | 4.85e-13 | 25 |
cervical cancer | 5.76e-13 | 5 |
cell type cancer | 9.57e-13 | 143 |
respiratory system cancer | 9.84e-11 | 16 |
bronchus cancer | 4.68e-09 | 7 |
bronchogenic carcinoma | 4.68e-09 | 7 |
lung cancer | 1.28e-08 | 15 |
clear cell adenocarcinoma | 7.57e-08 | 2 |
female reproductive organ cancer | 1.28e-07 | 27 |
reproductive organ cancer | 5.26e-07 | 29 |
lung carcinoma | 5.29e-07 | 9 |